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delly SV intansv

updated 10.4 years ago by Dan Tenenbaum ★ 8.2k • written 10.4 years ago by Abhishek Pratap ▴ 190

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visualization SV

updated 10.4 years ago by Vincent J. Carey, Jr. 6.7k • written 10.4 years ago by Abhishek Pratap ▴ 190

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Comment: DESeq2 used with zinbwave weights - Differences on contrasts calculations by maniphotography089 • 0

Encore IT Services Encore IT Services offers end-to-end IT consulting, software development, cloud solutions, and support services to help…

Answer: DESeq2 used with zinbwave weights - Differences on contrasts calculations by eja.gsee.r.m • 0

Hi your issue with DESeq2 contrasts and zinbwave weights sounds like it might stem from how weights are integrated during the different con…

Comment: How to analyze Affy data, CEL files not available by eja.gsee.r.m • 0

When analyzing data without raw files like Bobby MAS expression measures t important to work within the limits of the available informatio…

Answer: Guidance on limma for pseudobulk scRNA-seq with multi-factor design by Gordon Smyth 53k

What you describe sounds a good approach to me. I would also use sample weights (`sample.weights=TRUE` when running `voomLmFit`) and robust…

Comment: Can I set the normalizationFactors of DEseq2 object as 1 after using RUVg? by Michael Love 43k

I moved your post from an "answer" to a "comment". I don't know about `offst()` function, what is the scale or direction, or whether you a…

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Answer: Limpa Pipeline Order

A: How barcode-plot enrichment is calculated?

Answer: ROAST compare results with complex design

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