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Student
samples
sampleNumbers
DESeq2
written 2.6 years ago by
Lidia
• 0
6
votes
4
replies
1.9k
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Which rlog should I use for DESeq2 analysis
samples
rlog
DESeq2
updated 3.0 years ago by
Michael Love
42k • written 3.0 years ago by
rafaelsolersanblas
▴ 50
0
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1
reply
747
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Paired samples in DESeq2
R
deseq2
Paired
Samples
updated 5.8 years ago by
Michael Love
42k • written 5.8 years ago by
m.wekking
• 0
2
votes
1
reply
1.0k
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edgeR normalisation which samples to include
edger
normalization
samples
comparisons
updated 7.1 years ago by
Gordon Smyth
51k • written 7.1 years ago by
roser.navarro
• 0
4 results • Page
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Answer: DE analysis on Single cell RNA Seq time course data (using pseudotime) with 5 di
by
James W. MacDonald
67k
The two contrasts at the bottom are identical but for the sign of the logFC, so you should expect the same results (except for flipped sign…
Comment: Identical samples after deseq2 batch effect removal
by
Michael Love
42k
Oh, i didn't realize there is another method in the mix here. I would not necessarily trust this "batch correction" method, and suspect o…
Comment: Identifying potentially associated gene set to drug response using GSVA
by
Kent
• 0
Hi @robertc thanks for the reply. I should have explained to you the context first. I am testing over a hundred drugs on patient samples (s…
Answer: BiocNeighbours Utility for k-Nearest Neighbour Classification
by
James W. MacDonald
67k
You can easily answer this question yourself. ``` > library(BiocPkgTools) Loading required package: htmlwidgets > depdf <- buildPkgDe…
Answer: HilBertVis install error
by
James W. MacDonald
67k
It appears you have compiler flags set that preclude you from compiling (-Werror=format-security). If I install `HilbertVis` on my work box…
Votes
A: TopGO: How to retrieve the gene list related to a GO ID ?
A: Error in DESeqDataSet : some values in assay are not integers
A: correcting the batch effects in Limma and SVA
A: Using of limma moderated t-test with "corrected" expression matrix resulting fr
A: Using of limma moderated t-test with "corrected" expression matrix resulting fr
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