Bioconductor Single-cell RNA-Seq

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single-cell RNA-seq scran normalization

updated 5.6 years ago by Aaron Lun ★ 28k • written 5.6 years ago by daniel.borshagovski • 0

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Cancer Genomics Cancer Epigenomics Single-cell RNA-Seq Network theory Job

updated 6.0 years ago by ronniepubg • 0 • written 6.0 years ago by Andrew Teschendorff ▴ 60

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Comment: orgDB by shepherl 4.1k

You should look at the documentation on the help pages for those packages. It should be clear enough there. But to speed things along: `…

Comment: DiffBind edgeR normalization --- why are the normalization factors all equal to by Harry • 0

It's interesting to see how the normalization factors are all 1, yet the MA plot reflects changes, indicating that the normalization proces…

Comment: European Bioconductor Conference 2023 planning by Andrew • 0

Great information! This is a great opportunity for the computational biology community to connect and grow. @[Chill Guy Clicker][1] [1…

Comment: orgDB by Fatima • 0

how to do that?

Answer: Is it possible to model DNA methylation as a dose response in edgeR? by Gordon Smyth 52k

edgeR works with any linear model, so handles any combination of factors and covariates. If you include dose as a covariate in the linear m…

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Calculating TOM in blockwise WGCNA

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