Showing : Single-cell RNA-Seq • reset
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scran: excluding genes with extremely high expression during normalization?
single-cell RNA-seq scran normalization
updated 3.6 years ago by ★ 28k • written 3.6 years ago by • 0
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Job: JOB: Research Associate in Computational / Statistical Epigenomics and Single-Cell Omics
Cancer Genomics Cancer Epigenomics Single-cell RNA-Seq Network theory Job
updated 4.0 years ago by • 0 • written 4.1 years ago by ▴ 60
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Comment: Duplicate row.names when building SummarizedExperiment with make_se in DEP by Simran • 0
did you get your answer? I've been using DEP several times but the error only shows up now for some reason?
Comment: Does DiffBind make consensus peaks sets for samples from a given condition (e.g. by tahir.msajid • 0
Got it. Thank you Rory.
Comment: RUVSeq and DESeq2 -- all variables in design formula must be columns in colData by garbuzov • 0
Thanks! That was it... why did I think they were equivalent?
Comment: Time-course, comparison of two groups by boczniak767 ▴ 720
Thank you @gordon-smyth for your patience and time. I see that I need to reread carefully the user guide so I could follow your advice.
Comment: Time-course, comparison of two groups by boczniak767 ▴ 720
> Do you have actually have data or is this is a theoretical exercise? A the moment I don't have data from my principal investigator's exp…
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Calculation of module membership in WGCNA
A: converting ensembl transcript ID to ensemble gene: problem & missing values
Comment: From a ENST to ENSG
Comment: From a ENST to ENSG
Answer: Help with Error in DiffBind
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