Bioconductor Sizefactors

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4.4k

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normalization deseq2 sizefactors

updated 5.0 years ago by Michael Love 43k • written 5.0 years ago by mankadeep2 ▴ 40

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3.2k

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deseq2 betaPrior=FALSE sizeFactors

updated 9.8 years ago by Michael Love 43k • written 9.8 years ago by elenigeorgopoulou86 ▴ 10

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tximport DESeq2 normalizationfactors sizefactors

updated 4.2 years ago by Michael Love 43k • written 4.2 years ago by svenbioinf • 0

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2.8k

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deseq2 Tximport Sizefactors normalizationfactors spike-in

updated 4.8 years ago by Michael Love 43k • written 4.8 years ago by Hina Bandukwala • 0

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edger estimatedisp scran sizefactors

updated 8.8 years ago by Aaron Lun ★ 28k • written 8.8 years ago by mnaymik ▴ 10

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deseq2 sizefactors pca normalization library size factor

updated 6.6 years ago by Michael Love 43k • written 6.6 years ago by ipso • 0

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scrnaseq scrn sizefactors

7.7 years ago sfpacman • 0

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deseq2 sizeFactors

updated 7.5 years ago by Michael Love 43k • written 9.1 years ago by katzman ▴ 10

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deseq2 normalization sizefactors

updated 7.2 years ago by Michael Love 43k • written 7.2 years ago by René ▴ 30

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Comment: Intepretation of results by Tom • 0

[Locksmith Wombwell][1] I have been interested in using AUCell as a way to determine significantly enriched pathways in my single cell spat…

Comment: Gene Ontology (GO) Analysis by Tom • 0

[Locksmith near me][1] Hello, I'm learning about Gene Ontology analysis. I'm trying to understand the difference between the hyperGTest fun…

Comment: DiffBind; Error: No sites have activity greater than filter value by etiennedanis • 0

Same issue here as well. This is very weird because I never had this issue before. I started observing this issue with a new ATAC-seq da…

Comment: GSEA preranked analysis downstream of DEseq2 by Ajay • 0

`logFC * -log10(pval)` seems to be the pi-score proposed in this [paper][1] [1]: https://pmc.ncbi.nlm.nih.gov/articles/PMC3957066/

Comment: error in ChAMP loading file by janwilseo • 0

Any update on this post? I also had an issue with this. [erosion control](https://charlestonhydroseeding.com/)

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Answer: DiffBind; Error: No sites have activity greater than filter value

DiffBind; Error: No sites have activity greater than filter value

remove X and Y chromosome genes in RNA-seq data using DESeq2 pipeline

How to remove X & Y chromosome genes from RNAseq data

Is it advisable to remove X and Y chromosome genes in mouse bulk RNA-seq data at the level of the count matrix?

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Popular Question to Dario Strbenac ★ 1.6k