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Smart-Seq
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4
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Can I run DESeq2 with SMART-Seq data
DESeq2
SMART-seq
23 months ago
Assa Yeroslaviz
★ 1.5k
6
votes
3
replies
3.7k
views
Full length single-cell RNA-seq - tximport output for downstream analysis
tximport
Seurat
Smart-Seq
Smart-Seq2
updated 4.6 years ago by
Michael Love
43k • written 4.6 years ago by
lshepard
▴ 40
2 results • Page
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Comment: Problem using locateVariants() from the VariantAnnotation package
by
Marco
• 0
Ok, I think I found the problem. By looking at the `locateVariants()` source code, I was able to pinpoint that the problems is when trying …
Comment: Conumee for EPIC and EPICv2 copy number
by
Adam
• 0
As described on the [github](https://github.com/hovestadtlab/conumee2) the way to do this is using array_type = c("EPIC", "EPICv2") This i…
Comment: graper 1.22 Build is Broken
by
shepherl
4.1k
This is not an appropriate place to report this. this is for usage questions. maintainers are notified automatically when it is failing on …
Comment: graper 1.22 Build is Broken
by
shepherl
4.1k
This post does not fit the theme of this forum.
Comment: Unbalanced experiment with multiple samples from each patient.
by
canarias
• 0
Hi Aaron, I'm faced with an analysis that has basically the same problem as OP had, but is probably even more unbalanced: In most cases, I…
Votes
A: Unbalanced experiment with multiple samples from each patient.
Unbalanced experiment with multiple samples from each patient.
Answer: Vertical line at A=0, nothing else, on MA plot
Answer: GSVA Error Code "Calling gsva(expr=., gset.idx.list=., method=., ...) is defunct
Answer: Group-specific condition effects with individuals nested: matrix is not full ra
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