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jim.warwicker
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Answer: EdgeR: Exact test and glmQLFTest produce very different results
by
James W. MacDonald
64k
You should just use the quasi-likelihood pipeline, which controls type I error better than the exact test or likelihood ratio test.
Answer: limma::voom vs edgeR::voomLmFit - when to use?
by
James W. MacDonald
64k
The workflow you reference was written in 2018, and hasn't been updated since 2020, except for version bumps (it's meant to parallel an F10…
Comment: 'Subtracting' counts on basis of Negative control media and water samples
by
Karthik
•
0
I have entered the picture only in the analysis stage - the sequencing has all been performed and done.
> Besides, likely the noise level…
Comment: NCBI protein to NCBI cDNA (Ensembl conversions would be great as well) in R
by
James W. MacDonald
64k
It does look like CBP2 is an HGNC symbol, not a protein ID though.
```
> z <- select(ws, "CPB2", c("gene_names","xref_geneid","xref_ensemb…
Comment: How can I avoid artifacts in gene set/pathway scoring by UCell and similar algor
by
arina
•
0
Hi Omer,
Unfortunately I don't have an answer to your issue, but I am facing a very similar problem after integrating datasets that were …
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