Bioconductor TPP

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260

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TPP

updated 10 days ago by James W. MacDonald 68k • written 11 days ago by flowreen.shikwana • 0

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419

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TPP

updated 6 months ago by James W. MacDonald 68k • written 6 months ago by Alexandre Mahé • 0

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941

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TPP NPARC

updated 4.4 years ago by nils.kurzawa ▴ 20 • written 4.4 years ago by yangwanqi • 0

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589

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TPP

updated 5.0 years ago by Gordon Smyth 52k • written 5.0 years ago by esmaeil.dehghan • 0

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800

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software error TPP

updated 6.2 years ago by shepherl 4.1k • written 6.2 years ago by kkim369 • 0

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3.0k

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TPP

7.5 years ago Bioinformatics ▴ 30

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1.5k

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TPP

updated 7.6 years ago by Pariksheet Nanda ▴ 120 • written 7.6 years ago by Nemo ▴ 80

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1.3k

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TPP

updated 8.5 years ago by dchilds ▴ 40 • written 8.5 years ago by Bioinformatics ▴ 30

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tpp

updated 8.5 years ago by dchilds ▴ 40 • written 8.5 years ago by Bioinformatics ▴ 30

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1.3k

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TPP

updated 8.8 years ago by Martin Morgan 25k • written 8.8 years ago by Bioinformatics ▴ 30

10 results • Page 1 of 1

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Comment: DiffBind custom normalization factor by Abbie • 0

Hello! Thanks so much for adding dba.normalize and all the documentation in the manual! I'm hoping I can ask a follow-up question here. I…

Answer: CpGs with genomic positions greater than the chromosome size in EPICv2? by James W. MacDonald 68k

All of the annotation packages provided by Bioconductor are simply repackaging of existing data from one or more sources. In this case, the…

Comment: Using TPM from tximport of Salmon output for singscore by Kent • 0

Thank you for the suggestions Michael. Would you say that after filtering out the low count genes, `rlog(counts, blind = T)` is doing the s…

Comment: Using TPM from tximport of Salmon output for singscore by Michael Love 43k

For clustering generally we recommend `vst()` see the workflow for example. For working with individual samples, I can see how a scaling/t…

Comment: DESeq2 model - How to test case/control time course model when taking account wi by Michael Love 43k

I'd recommend working with a local statistician or someone familiar with linear models in R. I have to reserve my time on the support site …

Votes

clusterProfiler-GO enrichment Error

A: Machine learning in R book

Data preparation and Machine learning on time course RNAseq data

Answer: Use of org.Rn.eg.db with GRCr8 reference genome

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Popular Question to Dario Strbenac ★ 1.6k