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TranscriptR
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1
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2
replies
1.8k
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Problem installing packages including flowWorkspace
transcriptR
updated 3.4 years ago by
shepherl
4.1k • written 3.4 years ago by
Alice
▴ 10
0
votes
0
replies
1.2k
views
transcriptR predictStrand Error: subscript contains invalid names
transcriptR
predictStrand
5.0 years ago
jason.williams
▴ 10
1
vote
4
replies
1.6k
views
transcriptR ChIP-seq RNA-seq bam Error in mergeNamedAtomicVectors
TranscriptR
RNA-seq
ChIP-seq
updated 5.1 years ago by
James W. MacDonald
67k • written 5.1 years ago by
jason.williams
▴ 10
0
votes
6
replies
1.0k
views
Cannot put file path in for bam file when attempting to construct a TDS in transcriptR
transcriptR
updated 5.1 years ago by
James W. MacDonald
67k • written 5.1 years ago by
jason.williams
▴ 10
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Comment: [How to construct a model.matrix ]
by
kyj2226
• 0
Thanks to you, I learn a lot. Many thanks, Yujin.
Comment: How to extract phastcons score for all protein coding genes and lncRNAs using Ge
by
rania.alanany
• 0
thank you for your advice, I posted separate post.
Comment: How to extract phastcons score for all protein coding genes and lncRNAs using Ge
by
Robert Castelo
★ 3.4k
Hi, this is a long comment thread on 4-year old post, please open a new post with you question. To increase the odds of getting useful answ…
Answer: DESeq2 rerun returns different results
by
ATpoint
★ 4.5k
DESeq2 is deterministic if you use same input, code and software versions. Make sure to version-control your environment by at least tracki…
Answer: [How to construct a model.matrix ]
by
Gordon Smyth
51k
> Initially, I simply used > `lm(Epigenetic_age ~ Age_group + Age + Sex + PC1 + PC2 + PC3 + PC4 + PC5 + B + CD4T + CD8T + Mono + NK + Neutr…
Votes
Answer: [How to construct a model.matrix ]
C: DESeq2 baseMean values for each sample
C: DESeq2 baseMean values for each sample
Comment: ColData and ERROR: rows did not converge in beta, labelled in mcols(object)$beta
A: Some questions for remove batch effect by using mnnCorrect
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Robert Castelo
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Michael Stadler
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ATpoint
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James W. MacDonald
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