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WES
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Applying exomeCopy to call CNVs withouts controls considering batch effects
exomeCopy
CNV
WES
3.6 years ago
Cheng
• 0
19
votes
8
replies
3.7k
views
How to check the read length for all the TCGA data samples in GDC?
gdc
tcga
wes
gdc data
updated 6.6 years ago by
Sean Davis
21k • written 6.6 years ago by
Biologist
▴ 120
2
votes
2
replies
1.5k
views
detecting of CNV in WGS/WES data
CNV
WGS
WES
updated 7.3 years ago by
Haiying.Kong
▴ 110 • written 7.3 years ago by
Bogdan
▴ 670
0
votes
0
replies
943
views
Software for checking sample swap for matched WES
WES
8.0 years ago
Haiying.Kong
▴ 110
0
votes
0
replies
1.4k
views
any ideas on a workflow for exome seq data analysis with R?
exome
dnaseq
WES
8.4 years ago
arvand.akbari
• 0
5 results • Page
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Comment: Problem at champ.load
by
icecreamlover
• 0
Hello! Were you able to figure this out? I am running into the same error!
Comment: ChAMP - obtaining beta values using EPICv2 annotation
by
icecreamlover
• 0
Hello, Were you able to fix the error? I used the same document and I am running into the same error. I am curious if you have any feedba…
Comment: BiomaRt Possible Ensembl SSL connectivity problems detected.
by
Adam
• 0
Can this please be revisited and corrected ASAP? I'm encountering the same issue, using a slightly more modern version of R (4.1.0). It s…
Comment: Combining RNAseq and microarray data using edgeR/limma-voom
by
Adam Marstrand
• 0
Thank you!
Comment: Combining RNAseq and microarray data using edgeR/limma-voom
by
Adam Marstrand
• 0
Hi Gordon, Thanks for the answer! This makes a lot of sense. Your suggested pipeline (separate processing of datasets -> gene set analyses…
Votes
A: Down/Up-regulated genes asymmetry in edgeR differential expression analysis
Answer: Combining RNAseq and microarray data using edgeR/limma-voom
Answer: How do I merge a list of GRanges?
A: p.adjust BH generates duplicate values
Answer: Adjusted p-values become NA when sub-setting samples
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