Bioconductor Gdc

Showing : gdc • reset

votes

268

views

TCGA GenomicDataCommons GDC

written 3 months ago by António Miguel de Jesus Domingues ▴ 490

votes

replies

1.8k

views

GDC TCGA tcgabiolinks

updated 17 months ago by cute scientist • 0 • written 4.9 years ago by Antonio Ahn ▴ 10

votes

replies

775

views

tcgabiolinks filtering gdc TCGABiolinks rnaseq

3.7 years ago jam526 • 0

votes

replies

563

views

TCGAbiolinks GDC TCGA

3.8 years ago modarzi ▴ 10

votes

replies

909

views

TCGAbiolinks TCGA GDC

3.8 years ago modarzi ▴ 10

vote

replies

1.1k

views

TCGA MAF GDC snp mutations

updated 4.4 years ago by Sean Davis 21k • written 4.4 years ago by mario.zanfardino ▴ 160

votes

replies

927

views

genomicdatacommons tcga gdc rest http

updated 4.7 years ago by Sean Davis 21k • written 4.7 years ago by mk ▴ 20

votes

replies

1.3k

views

R gdc rna-seq dna methylation

updated 4.9 years ago by Sean Davis 21k • written 5.0 years ago by RichardJActon ▴ 50

votes

replies

2.7k

views

gdc tcga wes gdc data

updated 5.5 years ago by Sean Davis 21k • written 5.5 years ago by Biologist ▴ 110

votes

2.7k

views

tcgabiolinks tcga-brca gdc pam50 rna-seq

5.5 years ago pfrancislyon • 0

votes

replies

3.4k

views

tcgabiolinks tcga tcgadownload gdcprepare gdc

updated 6.5 years ago by Tiago Chedraoui Silva ▴ 260 • written 6.7 years ago by enigmargs • 0

votes

replies

2.9k

views

tcgabiolinks gdc

6.9 years ago jshelton • 0

12 results • Page 1 of 1

Recent ...

Replies

Answer: how to extract specific gene coordinates by passing a list of genes using homo by James W. MacDonald 63k

``` > subset(transcripts(Homo.sapiens, columns = "SYMBOL"), SYMBOL == "BRCA2") 'select()' returned 1:1 mapping between keys and columns …

Answer: tximport error: vroom by Michael Love 40k

Check that they all have same number of lines. I guess one of them was interrupted while writing out and may need to be re-run (Salmon).

Comment: tximport error: vroom by Kevin Blighe 3.8k

Cross-posted: https://www.biostars.org/p/9576578/

Comment: Exporting DESeq2 filtered results by James W. MacDonald 63k

I am interested to know what part of my response you found rude. I asked nicely that you don't add to ancient posts, said your post isn't r…

Comment: Speeding up of DelayedArray::write_block() by Hervé Pagès 16k

> I can imagine writing a sparse high-dimensional array in HDF5, but I'm still not sure how to implement the part where it is read and imme…

Votes

Comment: Speeding up of DelayedArray::write_block()

Unclear of calculating correlations with case+control samples together

Answer: Error MakeOrgPackagefromNCBI

Batch Effect in DESeq2, how to control, how to remove it, how to address biological question

Awards • All

Popular Question to mattia pelizzola ▴ 200