Bioconductor Gdc

Showing : gdc • reset

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747

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TCGA GenomicDataCommons GDC

written 17 months ago by António Miguel de Jesus Domingues ▴ 510

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2.5k

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GDC TCGA tcgabiolinks

updated 2.6 years ago by cute scientist • 0 • written 6.0 years ago by Antonio Ahn ▴ 10

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1.2k

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tcgabiolinks filtering gdc TCGABiolinks rnaseq

4.9 years ago jam526 • 0

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853

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TCGAbiolinks GDC TCGA

5.0 years ago modarzi ▴ 10

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1.4k

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TCGAbiolinks TCGA GDC

5.0 years ago modarzi ▴ 10

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1.5k

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TCGA MAF GDC snp mutations

updated 5.6 years ago by Sean Davis 21k • written 5.6 years ago by mario.zanfardino ▴ 160

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1.3k

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genomicdatacommons tcga gdc rest http

updated 5.9 years ago by Sean Davis 21k • written 5.9 years ago by mk ▴ 20

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1.8k

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R gdc rna-seq dna methylation

updated 6.1 years ago by Sean Davis 21k • written 6.1 years ago by RichardJActon ▴ 50

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3.7k

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gdc tcga wes gdc data

updated 6.6 years ago by Sean Davis 21k • written 6.6 years ago by Biologist ▴ 120

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3.3k

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tcgabiolinks tcga-brca gdc pam50 rna-seq

6.7 years ago pfrancislyon • 0

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4.0k

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tcgabiolinks tcga tcgadownload gdcprepare gdc

updated 7.7 years ago by Tiago Chedraoui Silva ▴ 260 • written 7.8 years ago by enigmargs • 0

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3.6k

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tcgabiolinks gdc

8.1 years ago • updated 8.0 years ago jshelton • 0

12 results • Page 1 of 1

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Comment: pathview - multiple states by Philippine • 0

:D Thank you!!! It works perfectly.

Answer: lfcShrink and alpha value by Michael Love 43k

The code I sent just tells summary what threshold to use when printing the table.

Comment: Crossover design with limma by Marek Gierlinski ▴ 30

Thank you for your answer. It is an interesting solution. I've never though of modifying the design matrix itself - I always try to have a …

Comment: pathview - multiple states by Guido Hooiveld ★ 4.1k

According to the the help page of `pathview` (type `?pathview`) the input should be `either vector (single sample) or a matrix-like data (m…

Comment: scuttle::perFeatureQCMetrics runs very slow for big scRNA-seq data by Aaron Lun ★ 28k

You can examine the structure of a `DelayedMatrix` by calling the `showtree()` function. For example: ``` library(scRNAseq) X <- fetchData…

Votes

Comment: pathview - multiple states

Answer: Crossover design with limma

Answer: Different PCA results when using rlog and vst transformations

Answer: contrast matrix design for a continuous variable

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