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affy package
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Different versions of r/affy combination may lead to differences in rma normalization results
microarray
affy
rma normalization
affy package
6.1 years ago
yshuang
• 0
0
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5.2k
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error in sort.int , 'x' must be atomic in affy::boxplot
affy package
boxplot
hgu133plus2
oligo package
updated 8.6 years ago by
James W. MacDonald
68k • written 8.6 years ago by
Javier Pérez Florido
▴ 840
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Comment: Error Loading Experiment from SimBenchData Package
by
ATpoint
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Is the Seurat package installed? The error somewhat suggests that it could be related, and at https://www.bioconductor.org/packages/release…
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Gordon Smyth
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Defining sample groups is separate to reading in the DIA-NN data, because the sample conditions and covariates are not necessarily coded in…
Comment: Sharing a collection of datasets in ExperimentHub
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Peter Hickey
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The [**scRNAseq**](https://bioconductor.org/packages/scRNAseq/) package ([source on GitHub](https://github.com/LTLA/scRNAseq)) might serve …
Comment: Using DESeq2 on single cell RNA Seq data of same cell type but different conditi
by
ReinholdGaylord99
• 0
Thank you so much! https://www.nature.com/articles/s41467-021-25960-2/ [geometry dash lite](https://geometrydashlite.online)
Comment: Guidance on limma for pseudobulk scRNA-seq with multi-factor design
by
Gordon Smyth
53k
I'm not sure that I understand. You have a dataset that, even after pseudo-bulking, still has 6000 samples? That is surprising. Retaining …
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Answer: ordinary t from limma [was: How would I normally compare swirl?]
Comment: readDNAStringSet with non DNA characters
Comment: Guidance on limma for pseudobulk scRNA-seq with multi-factor design
Answer: Guidance on limma for pseudobulk scRNA-seq with multi-factor design
Answer: Guidance on limma for pseudobulk scRNA-seq with multi-factor design
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