Bioconductor Oligo package

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microarray mirna oligo package pdinfobuilder pd.mirna

updated 4.0 years ago by soumyab.g ▴ 10 • written 6.5 years ago by rolan.zauner ▴ 20

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825

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oligo package

updated 4.7 years ago by James W. MacDonald 64k • written 4.7 years ago by cpyadav22 • 0

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760

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oligo package

updated 5.1 years ago by James W. MacDonald 64k • written 5.1 years ago by majeskea • 0

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1.0k

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amazon bioconductor aws s3 oligo package affybatch

5.6 years ago perdedorium • 0

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oligo package Rstudio fatal error microarray CEL

6.0 years ago biostR ▴ 10

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1.5k

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affy oligoclasses oligo package pdinfobuilder annotationdbi

updated 6.4 years ago by James W. MacDonald 64k • written 6.4 years ago by Aedin Culhane ▴ 510

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4.3k

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affy package boxplot hgu133plus2 oligo package

updated 6.7 years ago by James W. MacDonald 64k • written 6.7 years ago by Javier Pérez Florido ▴ 840

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948

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pseudoimage oligo affymetrix mouse gene arrays oligo package

updated 7.1 years ago by James W. MacDonald 64k • written 7.1 years ago by Javier Pérez Florido ▴ 840

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Comment: GOslim missing GO term by amanda • 0

Thank you for the advice and many thanks! It is WGCNA analysis. I will try your method today and see if there are some consistencies.

Comment: GOslim missing GO term by James W. MacDonald 64k

Is this a WGCNA analysis (multiple co-expression clusters sounds like WGCNA)? If so, none of that is inferential or easily interpreted. It …

Comment: GOslim missing GO term by amanda • 0

For each group, I generated multiple co-expression clusters, and within each cluster, cluster PC1 was correlated with PC1 of multiple clini…

Comment: GOslim missing GO term by James W. MacDonald 64k

What do you mean by 'enriched with ... GO terms from their correlations with clinical traits'? Are you doing a GO hypergeometric or somethi…

Comment: GOslim missing GO term by amanda • 0

I have multiple groups to compare with, and each enriched with hundreds of GO terms from their correlations with clinical traits (top1 pval…

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Comment: Why is DMRcate not available for Bioconductor version 3.18?

Comment: limma::voom vs edgeR::voomLmFit - when to use?

Answer: limma::voom vs edgeR::voomLmFit - when to use?

Awards • All

Scholar to James W. MacDonald 64k

Scholar to Assa Yeroslaviz ★ 1.5k