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affy
•
reset
0
votes
0
replies
964
views
CHARM: Affymetrix 1.0R tiling arrays import
BSgenome
affy
BSgenome
oligo
charm
BSgenome
affy
BSgenome
oligo
charm
12.7 years ago
Guest User
★ 13k
0
votes
3
replies
1.3k
views
Differences in results analyzing Mouse Gene 1.0-ST using oligo and affy package
affy
limma
oligo
affy
limma
oligo
updated 12.7 years ago by
James W. MacDonald
68k • written 12.7 years ago by
Jon Toledo
▴ 20
0
votes
10
replies
2.3k
views
Agilent Mouse 8x60K array
affy
affy
updated 12.7 years ago by
Gordon Smyth
53k • written 12.8 years ago by
Nathan Nat Goodman
▴ 60
0
votes
2
replies
1.5k
views
BiomaRt: getLDS keeps returning NULL
mouse4302
probe
affy
biomaRt
mouse4302
probe
affy
biomaRt
updated 12.8 years ago by
Steffen Durinck
▴ 540 • written 12.8 years ago by
Steven
▴ 110
0
votes
2
replies
1.4k
views
Error message (probably) from AffyBatch.R when using a modified CDF
cdf
affy
makecdfenv
cdf
affy
makecdfenv
updated 12.8 years ago by
James W. MacDonald
68k • written 12.8 years ago by
Hugh Shanahan
▴ 50
0
votes
1
reply
815
views
differential expression analysis for 1 vs 1 experiment
affy
limma
affy
limma
updated 12.8 years ago by
Steve Lianoglou
★ 13k • written 12.8 years ago by
hsharm03@students.poly.edu
▴ 180
0
votes
2
replies
3.3k
views
R 2.15.2 trouble
affy
limma
gcrma
affy
limma
gcrma
updated 12.8 years ago by
Martin Morgan
25k • written 12.8 years ago by
Guest User
★ 13k
0
votes
1
reply
1.1k
views
affy annotation database
Annotation
cdf
affy
Annotation
cdf
affy
updated 12.8 years ago by
James W. MacDonald
68k • written 12.8 years ago by
Paul Rigor
▴ 20
0
votes
2
replies
1.2k
views
question of justRMA on exon array
cdf
affy
cdf
affy
updated 12.8 years ago by
James W. MacDonald
68k • written 12.8 years ago by
Jack Luo
▴ 450
0
votes
3
replies
2.9k
views
Filtering out duplicate probes in Affy data
Annotation
mouse4302
annotate
affy
Annotation
mouse4302
annotate
affy
updated 12.8 years ago by
James W. MacDonald
68k • written 12.8 years ago by
hsharm03@students.poly.edu
▴ 180
0
votes
1
reply
1.4k
views
Bioconductor Digest, Vol 119, Issue 1
Preprocessing
Homo sapiens
affy
oligo
RPA
Preprocessing
Homo sapiens
affy
oligo
RPA
updated 12.8 years ago by
w langdon
▴ 20 • written 12.8 years ago by
Leo Lahti
▴ 40
0
votes
2
replies
1.6k
views
normalise many cel files TCBB-2007-11-0161_noCEL.tar
Cancer
Homo sapiens
affy
Cancer
Homo sapiens
affy
updated 12.8 years ago by
w langdon
▴ 20 • written 12.8 years ago by
Martin Morgan
25k
0
votes
0
replies
1.0k
views
normalise many cel files TCBB-2007-11-0161_noCEL.tar
Homo sapiens
affy
Homo sapiens
affy
12.8 years ago
Guest User
★ 13k
0
votes
6
replies
1.7k
views
bout big data set for Affy R packge
affy
affy
updated 12.9 years ago by
Stephen Piccolo
▴ 600 • written 12.9 years ago by
刘伟
▴ 30
0
votes
0
replies
765
views
Fwd: bout big data set for Affy R packge
affy
affy
12.9 years ago
刘伟
▴ 30
0
votes
1
reply
1.5k
views
Building the tomato annotation library(Affy)
Annotation
affy
Annotation
affy
updated 12.9 years ago by
James W. MacDonald
68k • written 12.9 years ago by
Jorge Mena-Ali
▴ 10
0
votes
4
replies
1.9k
views
AnnotationForge example does not work
GO
Cancer
ChipName
probe
affy
GO
Cancer
ChipName
probe
affy
updated 12.9 years ago by
James F. Reid
▴ 120 • written 12.9 years ago by
Guest User
★ 13k
0
votes
1
reply
1.1k
views
Does the X_laevis_2 cdf show X_laevis gen 1 probes?
Xenopus laevis
probe
affy
Xenopus laevis
probe
affy
updated 13.0 years ago by
James W. MacDonald
68k • written 13.0 years ago by
Philip Cheung
▴ 10
0
votes
2
replies
1.8k
views
frma for Nimblegen arrays?
Microarray
Annotation
Normalization
affy
PROcess
safe
frma
frmaTools
Microarray
affy
updated 13.0 years ago by
Benilton Carvalho
★ 4.3k • written 13.0 years ago by
wrighth
▴ 260
0
votes
8
replies
2.9k
views
CDF for GeneChip miRNA 2 array - Is there a miRNA 3 CDF?
miRNA
GO
cdf
affy
arrayQualityMetrics
miRNA
GO
cdf
affy
arrayQualityMetrics
updated 13.0 years ago by
James W. MacDonald
68k • written 13.0 years ago by
Stephen Turner
▴ 290
0
votes
1
reply
1.5k
views
[combat] UPC availablility
affy
frma
SCAN.UPC
affy
frma
SCAN.UPC
updated 13.0 years ago by
Stephen Piccolo
▴ 600 • written 13.0 years ago by
W. Evan Johnson
▴ 870
0
votes
0
replies
820
views
Bioconductor Digest, Vol 117, Issue 6
affy
affy
13.0 years ago
Dick Beyer
★ 1.4k
0
votes
0
replies
857
views
Rank Product question.
affy
affy
13.0 years ago
sai nitin
▴ 10
0
votes
5
replies
1.9k
views
frma for Nimblegen arrays?
Microarray
Normalization
affy
PROcess
safe
frma
Microarray
Normalization
affy
PROcess
updated 13.0 years ago by
Matthew McCall
▴ 830 • written 13.0 years ago by
wrighth
▴ 260
0
votes
1
reply
1.3k
views
Convert Affy SNP array 0, 1, 2 to A C G T
SNP
affy
convert
SNP
affy
convert
13.0 years ago
Fabrice Tourre
▴ 970
0
votes
3
replies
1.6k
views
Annotation using the affy package
GO
probe
affy
GO
probe
affy
updated 13.0 years ago by
James W. MacDonald
68k • written 13.0 years ago by
Guest User
★ 13k
0
votes
2
replies
1.6k
views
New Bioconductor Package: SCAN.UPC
Normalization
affy
frma
Normalization
affy
frma
updated 13.0 years ago by
Stephen Piccolo
▴ 600 • written 13.1 years ago by
W. Evan Johnson
▴ 870
0
votes
1
reply
1.3k
views
Reading in of Exon Array CEL files for normalization/ workflow
Normalization
GO
cdf
affy
Normalization
GO
cdf
affy
updated 13.1 years ago by
Sean Davis
21k • written 13.1 years ago by
Jeremy Ng
▴ 180
0
votes
0
replies
1.4k
views
NAs in snp.rhs.tests
SNP
illuminaHumanv1
affy
crlmm
SNP
illuminaHumanv1
affy
crlmm
13.1 years ago
maria traka IFR
▴ 30
0
votes
3
replies
2.0k
views
Assigning gene symbols to Affymetrix data and averaging probes
Annotation
annotate
affy
limma
convert
Annotation
annotate
affy
limma
convert
updated 13.1 years ago by
James W. MacDonald
68k • written 13.1 years ago by
Hoyles, Lesley
▴ 50
0
votes
1
reply
1.3k
views
AnnotationDBI
GO
ChipName
probe
affy
GO
ChipName
probe
affy
updated 13.1 years ago by
James W. MacDonald
68k • written 13.1 years ago by
Guest User
★ 13k
0
votes
2
replies
1.9k
views
creating GSEA files using biomart
affy
biomaRt
affy
biomaRt
updated 13.1 years ago by
Steffen Durinck
▴ 540 • written 13.1 years ago by
Juliet Hannah
▴ 360
0
votes
5
replies
1.7k
views
GEOquery-Problem related to importing data set
affy
affy
updated 13.2 years ago by
James W. MacDonald
68k • written 13.2 years ago by
Roopa Subbaiaih
▴ 130
0
votes
5
replies
1.8k
views
edgeR query
Microarray
affy
edgeR
Microarray
affy
edgeR
updated 13.2 years ago by
Steve Lianoglou
★ 13k • written 13.2 years ago by
Shravanthi P
▴ 20
0
votes
2
replies
1.2k
views
Cannot construct AnnotationDb for GOStats
GO
affy
GOstats
biomaRt
GO
affy
GOstats
biomaRt
13.2 years ago
wrighth
▴ 260
0
votes
2
replies
1.7k
views
Affy mas5 scaling
Normalization
affy
Normalization
affy
updated 13.3 years ago by
yao chen
▴ 210 • written 13.3 years ago by
Liat Shavit Grievink
▴ 60
0
votes
1
reply
1.9k
views
Error: Re: Annotation Database for Agilent 8x60K Human Gene Expression Arrays
Annotation
probe
affy
AnnotationDbi
Agi4x44PreProcess
Annotation
probe
affy
AnnotationDbi
updated 13.3 years ago by
Marc Carlson
★ 7.2k • written 13.3 years ago by
Karthik K N
▴ 200
0
votes
0
replies
1.1k
views
Exonmap & xmapcore covdesc variable problem
affy
exonmap
xmapcore
affy
exonmap
xmapcore
13.4 years ago
Prime, John
▴ 10
0
votes
2
replies
1.3k
views
Quality Diagnostics of Affy Arrays using PLM
affy
affy
updated 13.4 years ago by
Ben Bolstad
★ 1.2k • written 13.4 years ago by
Guest User
★ 13k
0
votes
0
replies
1.9k
views
Is there an R package to export genotype data to PED /MAP files?
affy
convert
affy
convert
13.4 years ago
Javier Pérez Florido
▴ 840
0
votes
2
replies
1.8k
views
reading single channel Agilent data with limma [was arrayQualityMetrics d...
affy
limma
arrayQualityMetrics
affy
limma
arrayQualityMetrics
13.4 years ago
Alogmail2@aol.com
▴ 90
0
votes
1
reply
1.8k
views
reading single channel Agilent data with limma [was arrayQualityMetrics doesn't work...]
affy
limma
arrayQualityMetrics
affy
limma
arrayQualityMetrics
updated 13.4 years ago by
Wolfgang Huber
★ 13k • written 13.4 years ago by
Gordon Smyth
53k
0
votes
1
reply
1.3k
views
arrayQualityMetrics() doesn't work for one-color non Affy arrays
affy
affy
updated 13.4 years ago by
Wolfgang Huber
★ 13k • written 13.4 years ago by
Alogmail2@aol.com
▴ 90
0
votes
0
replies
959
views
XPS package working with Affymetrix GeneChip 1.0 ST at gene level
cdf
affy
plier
xps
cdf
affy
plier
xps
13.4 years ago
cstrato
★ 3.9k
0
votes
3
replies
1.4k
views
XPS package working with Affymetrix GeneChip 1.0 ST at gene level
cdf
affy
xps
cdf
affy
xps
updated 13.4 years ago by
cstrato
★ 3.9k • written 13.4 years ago by
Guest User
★ 13k
0
votes
4
replies
1.4k
views
frmaTools: error with 'convertPlatform'
cdf
affy
convert
cdf
affy
convert
updated 13.4 years ago by
Matthew McCall
▴ 830 • written 13.4 years ago by
Guido Hooiveld
★ 4.1k
0
votes
0
replies
1.1k
views
how to rank affy probesets by their probe-effect magnitude
probe
affy
RPA
probe
affy
RPA
13.5 years ago
Leo Lahti
▴ 40
0
votes
9
replies
2.4k
views
necessity of moderated t statistic and false discoveries for small predefined gene list?
Cancer
affy
limma
Cancer
affy
limma
updated 13.5 years ago by
Moshe Olshansky
▴ 260 • written 13.5 years ago by
Richard Friedman
★ 2.0k
0
votes
6
replies
2.4k
views
eset -Affy Mouse Gene 1.0 ST. Array-
affy
affy
updated 13.5 years ago by
James W. MacDonald
68k • written 13.5 years ago by
alessandro brozzi
▴ 120
0
votes
3
replies
2.2k
views
How can I remove control probesets from the expressionset object in gene expression analysis with Affy Human Gene 1.0ST microarray
Microarray
Annotation
Normalization
GO
probe
genefilter
affy
limma
oligo
Microarray
GO
updated 13.5 years ago by
Juan Fernández Tajes
▴ 190 • written 13.5 years ago by
James W. MacDonald
68k
1,805 results • Page
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Comment: "Watched Tags" are being erased rather than updated
by
dipakosikotes
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Possibly a combination: some change in the forum software that affects some accounts/configurations but not all [unblocked games][1] […
Answer: EuroBioC2023 abstract submission is open!
by
Hao
• 0
It's obvious that the blogger hought on details. It is not only easy to read but also makes the content more rich and interesting.[1v1 …
Comment: "Watched Tags" are being erased rather than updated
by
shepherl
4.2k
I can reproduce this and have opened an issue on the code base https://github.com/Bioconductor/support.bioconductor.org/issues/112
Comment: "Watched Tags" are being erased rather than updated
by
shepherl
4.2k
we can investigate this issue. thank you for bringing it to our attention
Comment: deseq2 filter the low counts
by
Michael Love
43k
> But within each comparison (contrast), if I trace some DEGs back to the original salmon merged gene counts (or even to normalised counts)…
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Bioconductor 3.22 Released!
Bioconductor 3.22 Released!
Comment: "Watched Tags" are being erased rather than updated
Comment: deseq2 filter the low counts
Answer: DESeq2 interactions
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