Showing : affy • reset
3
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5
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2.1k
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Farms/Call.INI using oligo package?
probe affy oligo farms probe affy oligo farms
updated 12.0 years ago by ▴ 210 • written 12.0 years ago by ▴ 270
0
votes
1
reply
3.1k
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Analysis of Human Gene 1.1 ST Array
Microarray cdf affy PROcess oligo xps Microarray cdf affy PROcess oligo xps
updated 12.0 years ago by 68k • written 12.0 years ago by ▴ 190
0
votes
3
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2.2k
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Summarisation in oligo package after exclusion of probes containing SNPs
probe affy oligo probe affy oligo
updated 12.0 years ago by ▴ 20 • written 12.0 years ago by ★ 13k
0
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1
reply
2.1k
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Coercing matrix into expression set, for normalization of only subsets of miRNAs (affy miRNA3.0)
miRNA Normalization GO Biobase affy convert oligo miRNA Normalization GO Biobase affy
updated 12.0 years ago by ▴ 190 • written 12.0 years ago by 68k
0
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7
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2.5k
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oligo package reading in cel files
affy affy
updated 12.0 years ago by 68k • written 12.0 years ago by ★ 13k
0
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2
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1.1k
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Coercing matrix into expression set, for normalization of only subsets of miRNAs (affy miRNA3.0)
miRNA affy miRNA affy
updated 12.0 years ago by 68k • written 12.0 years ago by ▴ 30
0
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1
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2.6k
views
affy - Anotation of Afymetrix PrimeView chipe
cdf probe affy limma cdf probe affy limma
updated 12.0 years ago by 68k • written 12.0 years ago by ▴ 10
0
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2
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1.6k
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segfault ReadAffy cause 'memory not mapped'
Cancer hgu133plus2 affy PROcess Cancer hgu133plus2 affy PROcess
updated 12.0 years ago by ★ 1.2k • written 12.0 years ago by ▴ 70
0
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2
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5.5k
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Normalization before ComBat
Microarray Normalization probe affy frma Microarray Normalization probe affy frma
updated 12.1 years ago by ▴ 40 • written 12.1 years ago by ▴ 870
0
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0
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1.7k
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How does one deal with spatial effects detected on single channel microarrays?
Microarray Normalization hu6800 affy gcrma marray nnNorm Harshlight Microarray hu6800
12.1 years ago Scott Robinson ▴ 130
1
vote
1
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2.1k
views
Mapping Affymetrix annotations with Bioconductor annotations
Annotation Organism zebrafish cdf affy AnnotationForge Annotation Organism zebrafish cdf
updated 12.1 years ago by 68k • written 12.1 years ago by ▴ 80
0
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6
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1.8k
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Limma vs GEE
affy limma affy limma
updated 12.1 years ago by 53k • written 12.1 years ago by ▴ 380
0
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2
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1.8k
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SCAN.UPC vs NUSE
affy affyPLM SCAN.UPC affy affyPLM SCAN.UPC
updated 12.1 years ago by ▴ 600 • written 12.1 years ago by ▴ 10
0
votes
0
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2.8k
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Importing quantile normalized .txt file to limma for differential expression
Normalization affy limma oligo xps Normalization affy limma oligo xps
12.1 years ago James W. MacDonald 68k
2
votes
1
reply
2.3k
views
RLE plot from expression dataset
affy affy
updated 12.1 years ago by ★ 3.9k • written 12.1 years ago by ▴ 120
0
votes
2
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2.9k
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RMA normalization for Affymetrix CEL Files (Subscript out of bounds error)
Normalization affy Normalization affy
12.2 years ago Gundala Viswanath ▴ 230
0
votes
0
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1.3k
views
Human Transcriptome Array 2.0 chip
Microarray affy Microarray affy
12.2 years ago Guest User ★ 13k
0
votes
6
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2.1k
views
How does one deal with spatial effects detected on single channel microarrays?
Microarray Normalization affy marray nnNorm Microarray Normalization affy marray nnNorm
updated 12.2 years ago by ★ 3.9k • written 12.2 years ago by ★ 13k
0
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1
reply
1.5k
views
XPS package QC data
affy arrayQualityMetrics xps affy arrayQualityMetrics xps
12.2 years ago cstrato ★ 3.9k
0
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3
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1.8k
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XPS package QC data
affy arrayQualityMetrics xps affy arrayQualityMetrics xps
updated 12.2 years ago by ★ 3.9k • written 12.2 years ago by ▴ 40
0
votes
9
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2.7k
views
RNA degradation plot with oligo package GeneFeatureSet objects
affy oligo affy oligo
updated 12.2 years ago by 68k • written 12.2 years ago by ▴ 360
0
votes
8
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3.3k
views
Affy: probeset to gene expression with expresso
probe affy probe affy
updated 12.2 years ago by 68k • written 12.2 years ago by ▴ 50
0
votes
1
reply
1.4k
views
答复: an error in AnnotationForge
Annotation ChipName annotate affy AnnotationForge Annotation ChipName annotate affy
12.2 years ago joseph ▴ 50
0
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1
reply
1.3k
views
an error in AnnotationForge
Annotation ChipName annotate affy AnnotationForge Annotation ChipName annotate affy
updated 12.3 years ago by ★ 7.2k • written 12.3 years ago by ▴ 50
0
votes
0
replies
847
views
Updated affy package? ReadAffy/ AffyBatch has change and breaks my pipeline!
cdf affy cdf affy
12.3 years ago elliot harrison ▴ 230
0
votes
0
replies
1.2k
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illumina microarray and affymetrix exon array data
Microarray affy Microarray affy
12.3 years ago Rao,Xiayu ▴ 550
0
votes
1
reply
513
views
RJpGene.1.0 and RCnGene.1.0 .CDF files
cdf affy cdf affy
updated 12.3 years ago by 68k • written 12.3 years ago by ★ 13k
0
votes
0
replies
929
views
Gene expression clustering using several dependent samples
Clustering affy Clustering affy
12.4 years ago Moritz Kebschull ▴ 100
0
votes
5
replies
2.1k
views
ERCC spike-in probes in
Microarray Normalization cdf affy Microarray Normalization cdf affy
updated 12.4 years ago by 68k • written 12.4 years ago by ★ 13k
2
votes
4
replies
3.2k
views
makePdInfoPackage for Primeview arrays
BiocViews Annotation Cancer Organism cdf probe affy biocViews BiocViews BiocViews Cancer
updated 12.4 years ago by ★ 3.9k • written 12.4 years ago by ▴ 140
0
votes
2
replies
1.4k
views
Reading Affy CEL files
annotate affy convert oligo annotate affy convert oligo
updated 12.4 years ago by ▴ 40 • written 12.4 years ago by ▴ 10
0
votes
1
reply
1.5k
views
Reading Affy CEL files
affy affy
updated 12.4 years ago by 68k • written 12.4 years ago by ★ 13k
0
votes
1
reply
3.8k
views
Error to import Data Affymetrix
affy oligo xps affy oligo xps
updated 12.4 years ago by ★ 13k • written 12.4 years ago by ★ 13k
0
votes
1
reply
1.8k
views
SCAN-UPC: 12079 of 22283 probes returned for hgu133a CELs?
Normalization hgu133a probe affy PROcess SCAN.UPC Normalization hgu133a probe affy
updated 12.5 years ago by ▴ 20 • written 12.5 years ago by ▴ 600
0
votes
4
replies
1.7k
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Queries about getting annotation post-Limma analysis
Normalization affy limma biomaRt oligo Normalization affy limma biomaRt oligo
updated 12.5 years ago by ▴ 750 • written 12.5 years ago by ▴ 180
0
votes
1
reply
1.3k
views
Add new affy organism platform
Microarray Annotation Organism cdf db0 probe annotate affy Microarray Annotation cdf
updated 12.5 years ago by ★ 7.2k • written 12.5 years ago by ▴ 50
0
votes
4
replies
1.8k
views
error using frma() with brainarray CDFs
cdf affy cdf affy
updated 12.5 years ago by ▴ 830 • written 12.5 years ago by ▴ 100
0
votes
3
replies
1.1k
views
Add new affy organism platform
Annotation affy Annotation affy
updated 12.5 years ago by ★ 7.2k • written 12.5 years ago by ▴ 50
0
votes
0
replies
1.3k
views
Normalizing a dataset from GEO to suit a classifier trained on another dataset
Microarray Normalization Preprocessing probe affy preprocessCore frma Microarray probe
12.6 years ago Matthew McCall ▴ 830
0
votes
0
replies
1.8k
views
Useful information about Ensembl release 71 mart databases
zebrafish PolyPhen SIFT affy genomes zebrafish PolyPhen SIFT affy genomes
12.6 years ago Thomas Maurel ▴ 800
0
votes
4
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2.3k
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Problem with Limma - Possible Limma/affy bug - minimal code not working
Normalization affy limma convert Normalization affy limma convert
updated 12.6 years ago by 68k • written 12.6 years ago by ▴ 30
0
votes
1
reply
1.4k
views
fRMA for Gene ST arrays
affy oligo frma ASSIGN affy oligo frma ASSIGN
updated 12.6 years ago by ▴ 830 • written 12.6 years ago by ▴ 100
0
votes
0
replies
1.2k
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faillure in ragene10stv1 in rat Gene St0.1 Affymetrix data
Annotation affy oligo xps Annotation affy oligo xps
12.6 years ago James W. MacDonald 68k
0
votes
0
replies
1.7k
views
identifying drosophila miRNA targets
miRNA drosophila2 probe affy convert affycoretools microRNA miRNA drosophila2 probe affy
12.6 years ago Fiona ▴ 70
0
votes
4
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1.5k
views
identifying drosophila miRNA targets
miRNA affy microRNA miRNA affy microRNA
updated 12.6 years ago by 68k • written 12.6 years ago by ▴ 70
0
votes
2
replies
1.6k
views
ChIPpeakAnno query
Microarray Annotation Cancer Prostate annotate affy convert biomaRt ChIPpeakAnno Cancer
updated 12.6 years ago by ▴ 10 • written 12.6 years ago by ★ 4.3k
0
votes
1
reply
1.7k
views
SCAN-UPC: 12079 of 22283 probes returned for hgu133a CELs?
hgu133a probe affy SCAN.UPC hgu133a probe affy SCAN.UPC
updated 12.7 years ago by ▴ 20 • written 12.7 years ago by ▴ 600
0
votes
1
reply
1.3k
views
merging of Affy U133A and U133B
affy affy
updated 12.7 years ago by 21k • written 12.7 years ago by ▴ 50
0
votes
0
replies
1.1k
views
normalize data in raster file
affy affy
12.7 years ago Erick Okuto ▴ 10
0
votes
1
reply
2.5k
views
Bioconductor Digest, Vol 120, Issue 12
Microarray qPCR Coverage Annotation Pathways Visualization Cancer Breast Organism affy
12.7 years ago Matthew Thornton ▴ 380
1,805 results • Page 6 of 37
Recent ...
Replies
Answer: EuroBioC2023 abstract submission is open! by Hao • 0
It's obvious that the blogger hought on details. It is not only easy to read but also makes the content more rich and interesting.[1v1 …
Comment: "Watched Tags" are being erased rather than updated by shepherl 4.2k
I can reproduce this and have opened an issue on the code base https://github.com/Bioconductor/support.bioconductor.org/issues/112
Comment: "Watched Tags" are being erased rather than updated by shepherl 4.2k
we can investigate this issue. thank you for bringing it to our attention
Comment: deseq2 filter the low counts by Michael Love 43k
> But within each comparison (contrast), if I trace some DEGs back to the original salmon merged gene counts (or even to normalised counts)…
Comment: deseq2 filter the low counts by empty_mt • 0
Thank you for you suggestion to look at the pre-filtering section in the DESeq2 vignettes - am I missing something? I have 6 treatments, …
Votes
Bioconductor 3.22 Released!
Bioconductor 3.22 Released!
Comment: "Watched Tags" are being erased rather than updated
Comment: deseq2 filter the low counts
Answer: DESeq2 interactions
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