Showing : affycomp • reset
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1.3k
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error with affycomp package
hgu133plus2 affycomp hgu133plus2 affycomp
updated 12.0 years ago by 65k • written 12.0 years ago by ▴ 240
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1.3k
views
Can't reproduce assessment data included in affycomp package
Cancer affy affycomp PROcess safe Cancer affy affycomp PROcess safe
updated 12.8 years ago by ▴ 590 • written 12.8 years ago by ★ 2.3k
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1.0k
views
Can't reproduce assessment data included in affycomp package
Cancer affy affycomp PROcess safe Cancer affy affycomp PROcess safe
13.1 years ago Harris A. Jaffee ▴ 590
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880
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Can't reproduce assessment data included in affycomp package
Cancer affycomp PROcess safe Cancer affycomp PROcess safe
13.1 years ago Philippe Serhal ▴ 10
0
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2
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903
views
Error in function read.spikein of affycomp
affycomp affycomp
15.4 years ago cstrato ★ 3.9k
0
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7
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1.6k
views
Problems with affycomp - quantile.default
cdf affy affycomp affyio cdf affy affycomp affyio
updated 16.8 years ago by 65k • written 16.8 years ago by ▴ 380
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786
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affycomp package vs web version
affycomp affycomp
17.1 years ago Stefano Calza ▴ 50
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1
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841
views
Plotting symbols for MA plot in Affycomp
affycomp affycomp
updated 18.1 years ago by 65k • written 18.1 years ago by ▴ 300
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1
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912
views
compare expression measures (and AffyComp)
Preprocessing affycomp Preprocessing affycomp
updated 18.3 years ago by 21k • written 18.3 years ago by ▴ 520
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1
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1.2k
views
Data Frame Error in Affycomp
affycomp affycomp
18.4 years ago McGee, Monnie ▴ 300
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2
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1.0k
views
affycompPlot
affycomp affycomp
updated 18.8 years ago by ▴ 200 • written 18.8 years ago by ▴ 520
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1
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869
views
affycomp hgu133 assessment error
hgu133a hgu95a affycomp hgu133a hgu95a affycomp
18.9 years ago Ariel Chernomoretz ▴ 380
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1.0k
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Re: affycomp: info.txt is Ok, new error message
affycomp affycomp
19.0 years ago Mohammad Esad-Djou ▴ 520
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0
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944
views
affycomp: info.txt is Ok, new error message
GUI affycomp GUI affycomp
19.0 years ago Mohammad Esad-Djou ▴ 520
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1
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1.0k
views
affycomp and info.txt? --> method.name and .data.frame
affycomp affycomp
updated 19.0 years ago by ★ 5.5k • written 19.0 years ago by ▴ 520
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1
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974
views
Re: affycomp and info.txt? (fwd)
GO affycomp GO affycomp
19.0 years ago Mohammad Esad-Djou ▴ 520
0
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0
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878
views
affycomp and info.txt?
affycomp affycomp
19.0 years ago Mohammad Esad-Djou ▴ 520
0
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0
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2.3k
views
affycomp, *.CEL and *.CSV files
affycomp PROcess affycomp PROcess
19.0 years ago Mohammad Esad-Djou ▴ 520
0
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1
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1.2k
views
affycomp and data.frame
hgu133a probe affycomp hgu133a probe affycomp
19.0 years ago Mohammad Esad-Djou ▴ 520
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0
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799
views
MAS5+32, PLIER+16 alorithms reported in affycomp
Normalization probe affycomp plier Normalization probe affycomp plier
19.3 years ago Ariel Chernomoretz ▴ 380
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1
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1.0k
views
How to unzip the spike-in data downloaded from Irizarry's Affycomp II ? (fwd)
affycomp affycomp
19.5 years ago fenghai duan ▴ 140
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2
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857
views
How to unzip the spike-in data downloaded from Irizarry's Affycomp II ?
affycomp affycomp
updated 19.5 years ago by 65k • written 19.5 years ago by ▴ 140
0
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1
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954
views
affycomp problem
affycomp affycomp
updated 19.7 years ago by ★ 2.3k • written 19.7 years ago by ▴ 100
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2
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1.2k
views
Suggestion for affycomp
affycomp affycomp
19.8 years ago Hinrich Göhlmann ▴ 20
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0
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751
views
RE: gcrma
hgu133a affycomp gcrma PROcess hgu133a affycomp gcrma PROcess
20.5 years ago Christian.Stratowa@vie.boehringer-ingel… ▴ 270
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969
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gcrma
hgu133a affycomp gcrma PROcess hgu133a affycomp gcrma PROcess
updated 20.5 years ago by ★ 2.3k • written 20.5 years ago by ▴ 270
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1.0k
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Affy analysis
Normalization affy affycomp Normalization affy affycomp
20.5 years ago Yuk Fai Leung ▴ 100
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1
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974
views
Gene Screening.
Microarray Cancer affy affycomp Microarray Cancer affy affycomp
updated 20.6 years ago by ▴ 60 • written 20.6 years ago by ★ 1.0k
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1.1k
views
affy devel fails to install with getBioC and Rbeta1.8.0
Microarray Cancer affy affycomp Microarray Cancer affy affycomp
updated 20.6 years ago by ▴ 230 • written 20.6 years ago by 65k
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1
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1.0k
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affy devel fails to install with getBioC and Rbeta1.8.0
affy affycomp affy affycomp
updated 20.6 years ago by 6.7k • written 20.6 years ago by ▴ 430
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0
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936
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Affy Win32 devel package
Microarray affy affycomp Microarray affy affycomp
20.9 years ago James W. MacDonald 65k
31 results • Page 1 of 1
Recent ...
Replies
Comment: Why does GSEA on edgeR results for randomized samples give highly significant p- by Gordon Smyth 50k
Please ask you own question. Inserting your own dataset into someone else's question like this is very impolite. I have already answered m…
Comment: package goseq seems to be not available on the latest version of R by Gordon Smyth 50k
limma most certainly is available. It installs in R 4.4.0 and Bioc 3.19 for all platforms without any issues. It has not had any period of …
Comment: package goseq seems to be not available on the latest version of R by Patrycja ▴ 20
limma package also isn't available.Is there any information when these packages will be available?
Comment: Why does GSEA on edgeR results for randomized samples give highly significant p- by Chris • 0
Thanks Gordon for the advice! I ran fgsea, gsva and camera(), the most significant pathways are different. For the purpose of finding pathw…
Comment: How to use bootRanges to bootstrap small RNA loci (nullranges package) by Michael Love 41k
Check the number of bootstrapped data per chromosome compared to the original, and then you can also look at its distribution. For this it'…
Votes
Answer: Why does GSEA on edgeR results for randomized samples give highly significant p-
Handling multiple differential expression comparisons
Answer: fgsea significant result
Answer: fgsea significant result
package goseq seems to be not available on the latest version of R
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