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affycomp
•
reset
0
votes
0
replies
2.3k
views
affycomp, *.CEL and *.CSV files
affycomp
PROcess
affycomp
PROcess
19.0 years ago
Mohammad Esad-Djou
▴ 520
0
votes
7
replies
1.6k
views
Problems with affycomp - quantile.default
cdf
affy
affycomp
affyio
cdf
affy
affycomp
affyio
updated 16.8 years ago by
James W. MacDonald
65k • written 16.8 years ago by
Markus Schmidberger
▴ 380
0
votes
1
reply
1.3k
views
Can't reproduce assessment data included in affycomp package
Cancer
affy
affycomp
PROcess
safe
Cancer
affy
affycomp
PROcess
safe
updated 12.8 years ago by
Harris A. Jaffee
▴ 590 • written 12.8 years ago by
Rafael A. Irizarry
★ 2.3k
0
votes
1
reply
1.3k
views
error with affycomp package
hgu133plus2
affycomp
hgu133plus2
affycomp
updated 12.0 years ago by
James W. MacDonald
65k • written 12.0 years ago by
Andrea Grilli
▴ 240
0
votes
1
reply
1.2k
views
affycomp and data.frame
hgu133a
probe
affycomp
hgu133a
probe
affycomp
19.0 years ago
Mohammad Esad-Djou
▴ 520
0
votes
1
reply
1.2k
views
Data Frame Error in Affycomp
affycomp
affycomp
18.4 years ago
McGee, Monnie
▴ 300
0
votes
2
replies
1.2k
views
Suggestion for affycomp
affycomp
affycomp
19.8 years ago
Hinrich Göhlmann
▴ 20
0
votes
1
reply
1.1k
views
affy devel fails to install with getBioC and Rbeta1.8.0
Microarray
Cancer
affy
affycomp
Microarray
Cancer
affy
affycomp
updated 20.6 years ago by
Stephen Nyangoma
▴ 230 • written 20.6 years ago by
James W. MacDonald
65k
0
votes
1
reply
1.0k
views
affy devel fails to install with getBioC and Rbeta1.8.0
affy
affycomp
affy
affycomp
updated 20.6 years ago by
Vincent J. Carey, Jr.
6.7k • written 20.6 years ago by
Nicholas Lewin-Koh
▴ 430
0
votes
0
replies
1.0k
views
Re: affycomp: info.txt is Ok, new error message
affycomp
affycomp
19.0 years ago
Mohammad Esad-Djou
▴ 520
0
votes
1
reply
1.0k
views
affycomp and info.txt? --> method.name and .data.frame
affycomp
affycomp
updated 19.0 years ago by
rgentleman
★ 5.5k • written 19.0 years ago by
Mohammad Esad-Djou
▴ 520
0
votes
0
replies
1.0k
views
Affy analysis
Normalization
affy
affycomp
Normalization
affy
affycomp
20.5 years ago
Yuk Fai Leung
▴ 100
0
votes
2
replies
1.0k
views
affycompPlot
affycomp
affycomp
updated 18.8 years ago by
Zhijin Jean Wu
▴ 200 • written 18.8 years ago by
Mohammad Esad-Djou
▴ 520
0
votes
1
reply
1.0k
views
How to unzip the spike-in data downloaded from Irizarry's Affycomp II ? (fwd)
affycomp
affycomp
19.5 years ago
fenghai duan
▴ 140
0
votes
0
replies
1.0k
views
Can't reproduce assessment data included in affycomp package
Cancer
affy
affycomp
PROcess
safe
Cancer
affy
affycomp
PROcess
safe
13.1 years ago
Harris A. Jaffee
▴ 590
0
votes
1
reply
975
views
Gene Screening.
Microarray
Cancer
affy
affycomp
Microarray
Cancer
affy
affycomp
updated 20.6 years ago by
Subramanian Karthikeyan
▴ 60 • written 20.6 years ago by
Stephen Henderson
★ 1.0k
0
votes
1
reply
974
views
Re: affycomp and info.txt? (fwd)
GO
affycomp
GO
affycomp
19.0 years ago
Mohammad Esad-Djou
▴ 520
0
votes
1
reply
969
views
gcrma
hgu133a
affycomp
gcrma
PROcess
hgu133a
affycomp
gcrma
PROcess
updated 20.5 years ago by
Rafael A. Irizarry
★ 2.3k • written 20.5 years ago by
Christian.Stratowa@vie.boehringer-ingel…
▴ 270
0
votes
1
reply
954
views
affycomp problem
affycomp
affycomp
updated 19.7 years ago by
Rafael A. Irizarry
★ 2.3k • written 19.7 years ago by
Tarca Adi Laurentiu
▴ 100
0
votes
0
replies
944
views
affycomp: info.txt is Ok, new error message
GUI
affycomp
GUI
affycomp
19.0 years ago
Mohammad Esad-Djou
▴ 520
0
votes
0
replies
936
views
Affy Win32 devel package
Microarray
affy
affycomp
Microarray
affy
affycomp
20.9 years ago
James W. MacDonald
65k
0
votes
1
reply
912
views
compare expression measures (and AffyComp)
Preprocessing
affycomp
Preprocessing
affycomp
updated 18.3 years ago by
Sean Davis
21k • written 18.3 years ago by
Mohammad Esad-Djou
▴ 520
0
votes
2
replies
903
views
Error in function read.spikein of affycomp
affycomp
affycomp
15.4 years ago
cstrato
★ 3.9k
0
votes
0
replies
880
views
Can't reproduce assessment data included in affycomp package
Cancer
affycomp
PROcess
safe
Cancer
affycomp
PROcess
safe
13.1 years ago
Philippe Serhal
▴ 10
0
votes
0
replies
878
views
affycomp and info.txt?
affycomp
affycomp
19.0 years ago
Mohammad Esad-Djou
▴ 520
0
votes
1
reply
869
views
affycomp hgu133 assessment error
hgu133a
hgu95a
affycomp
hgu133a
hgu95a
affycomp
18.9 years ago
Ariel Chernomoretz
▴ 380
0
votes
2
replies
858
views
How to unzip the spike-in data downloaded from Irizarry's Affycomp II ?
affycomp
affycomp
updated 19.5 years ago by
James W. MacDonald
65k • written 19.5 years ago by
fenghai duan
▴ 140
0
votes
1
reply
841
views
Plotting symbols for MA plot in Affycomp
affycomp
affycomp
updated 18.1 years ago by
James W. MacDonald
65k • written 18.1 years ago by
McGee, Monnie
▴ 300
0
votes
0
replies
799
views
MAS5+32, PLIER+16 alorithms reported in affycomp
Normalization
probe
affycomp
plier
Normalization
probe
affycomp
plier
19.3 years ago
Ariel Chernomoretz
▴ 380
0
votes
0
replies
786
views
affycomp package vs web version
affycomp
affycomp
17.1 years ago
Stefano Calza
▴ 50
0
votes
0
replies
751
views
RE: gcrma
hgu133a
affycomp
gcrma
PROcess
hgu133a
affycomp
gcrma
PROcess
20.5 years ago
Christian.Stratowa@vie.boehringer-ingel…
▴ 270
31 results • Page
1 of 1
Recent ...
Replies
Comment: Why does GSEA on edgeR results for randomized samples give highly significant p-
by
Chris
• 0
Intent to delete when going home. Sorry for that!
Comment: Why does GSEA on edgeR results for randomized samples give highly significant p-
by
Gordon Smyth
50k
Please ask you own question. Inserting your own dataset into someone else's question like this is very impolite. I have already answered m…
Comment: package goseq seems to be not available on the latest version of R
by
Gordon Smyth
50k
limma most certainly is available. It installs in R 4.4.0 and Bioc 3.19 for all platforms without any issues. It has not had any period of …
Comment: package goseq seems to be not available on the latest version of R
by
Patrycja
▴ 20
limma package also isn't available.Is there any information when these packages will be available?
Comment: Why does GSEA on edgeR results for randomized samples give highly significant p-
by
Chris
• 0
Thanks Gordon for the advice!
Votes
Comment: Why does GSEA on edgeR results for randomized samples give highly significant p-
Answer: Why does GSEA on edgeR results for randomized samples give highly significant p-
Handling multiple differential expression comparisons
Answer: fgsea significant result
Answer: fgsea significant result
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