Bioconductor Affypara

Showing : affypara • reset

votes

replies

1.5k

views

affyPara

3.9 years ago starsareintherose • 0

votes

replies

1.3k

views

Microarray cdf affyPara Microarray cdf affyPara

13.5 years ago Tobias Verbeke ▴ 50

votes

replies

1.3k

views

Microarray affyPara Microarray affyPara

13.6 years ago Wetzels, Yves [JRDBE Extern] ▴ 10

votes

replies

1.5k

views

cdf affy affyPara cdf affy affyPara

15.3 years ago Valerie Obenchain ★ 6.8k

votes

replies

2.7k

views

cdf affy affyPara cdf affy affyPara

15.3 years ago danieladna ▴ 110

votes

1.3k

views

cdf affy affyPara cdf affy affyPara

updated 15.3 years ago by Valerie Obenchain ★ 6.8k • written 15.3 years ago by danieladna ▴ 110

votes

replies

1.6k

views

Preprocessing affy affyPara Preprocessing affy affyPara

updated 15.9 years ago by Markus Schmidberger ▴ 380 • written 15.9 years ago by L L ▴ 30

7 results • Page 1 of 1

Recent ...

Replies

Comment: Making a Full Rank Model for Allele-Specific Expression with DESeq2 by Gordon Smyth 53k

The design matrix that I described above is completely general. I imagine that it would be possible to use the same approach to generate fu…

Comment: Making a Full Rank Model for Allele-Specific Expression with DESeq2 by chp265 • 0

Cool, glad to hear I wasn't missing some functionality in DESeq2. I don't know that much about the differences between DESeq2 vs edgeR; my …

Comment: Making a Full Rank Model for Allele-Specific Expression with DESeq2 by Michael Love 43k

Yes, so for one thing, note that Gordon has provided code for doing what you are asking in edgeR, which you can go ahead and use. You aske…

Comment: Making a Full Rank Model for Allele-Specific Expression with DESeq2 by chp265 • 0

I don't think DESeq2 has the ability to do multi-contrast comparisons, at least based on what I can understand of the manual; I can pick mu…

Comment: Upcoming Ensembl API and data access changes - new blog post available by Hugo Gruson • 0

Thanks for the update. To be very explicit: what is going to happen to the Biomart service, on which the biomaRt bioconductor package relie…

Votes

A: DESeq2: Is it possible to convert read counts to expression values via TPM and r

A: Filtering read counts matrix: how to deal with duplicated gene symbols, differen

Comment: limpa analysis advice

Answer: When to use edgeR or limma

Awards • All