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alpine
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3
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1.2k
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Bias correction in single end experiment for DEG and DET
tximport
alpine
7.9 years ago
yohann.nedelec
• 0
2
votes
7
replies
1.6k
views
Transcript abundance estimation for time-course RNA-seq data
rna-seq
salmon
alpine
transcript expression
updated 5.8 years ago by
Michael Love
42k • written 5.8 years ago by
relathman
▴ 20
2
votes
1
reply
2.3k
views
Should I use alpine and can I convert the output back to counts?
alpine
deseq2
updated 5.8 years ago by
Michael Love
42k • written 5.8 years ago by
harry.smith
▴ 20
0
votes
3
replies
772
views
Error in alpine::fitBiasModels shows as "offset needs to be finite"
Alpine
jcc
4.7 years ago
bioinagesh
• 0
5
votes
11
replies
1.5k
views
Visualization tool for GC-bias in SE data?
GC-bias
ALPINE
visualization
updated 3.9 years ago by
Michael Love
42k • written 3.9 years ago by
AKSR
▴ 20
5 results • Page
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Comment: ChAMP installation issue
by
shepherl
3.9k
Without showing the commands you tried and the full output including error it is impossible to help. Please provide additional information…
Answer: Gene set enrichment analysis
by
Guido Hooiveld
★ 3.9k
No, that is not possible. The idea of gene set enrichment analysis (GSEA) is that it checks which gene sets (pathways, GO categories) are e…
Comment: error in limma , contrast.matrix Number of rows of contrast matrix must match nu
by
zzrammal
• 0
thank you for your response. The problem is resolved. When i did a fit for the linear model i put NULL for the design fit <- lmFit(count_…
Comment: More regions in union when increasing DBA$config$mergeOverlap
by
Ziliang
• 0
I am so confused and frustrated learning to use this software. Isn't how you merge the peaksets one of the most important steps for the com…
Answer: SingleR Label.Ont
by
Denis
• 0
[Jackpot City Casino][1] is the perfect option when looking for an online casino in Canada for an exciting vacation and huge winnings that …
Votes
differential expression for Single-cell RNAseq data using edgeR
Why p value inconsistent when using different number of pathway score?
Answer: error in limma , contrast.matrix Number of rows of contrast matrix must match nu
Answer: minfi latest update for EPIC V2 chip
A: AIC-like measure for DESeq2
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