Showing : annotationTrack • reset
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Gviz: Setting Up Colour / Fill for AnnotationTrack (strand-dependent colour)
Gviz gviz-package GFF annotationtrack strand-dependent
updated 5.9 years ago by ▴ 750 • written 5.9 years ago by • 0
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Question: Change the color of the link between 2 features belonging to the same group depending on the type of the link
annotationTrack Gviz
updated 9.2 years ago by ★ 1.6k • written 9.3 years ago by ▴ 40
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Comment: CleanUpRNAseq with a GTF that is missing mitochondria annotation data by rcreed • 0
The updated version worked well on my data. Thank you!
Answer: DE analysis on Single cell RNA Seq time course data (using pseudotime) with 5 di by James W. MacDonald 67k
The two contrasts at the bottom are identical but for the sign of the logFC, so you should expect the same results (except for flipped sign…
Comment: Identical samples after deseq2 batch effect removal by Michael Love 42k
Oh, i didn't realize there is another method in the mix here. I would not necessarily trust this "batch correction" method, and suspect o…
Comment: Identifying potentially associated gene set to drug response using GSVA by Kent • 0
Hi @robertc thanks for the reply. I should have explained to you the context first. I am testing over a hundred drugs on patient samples (s…
Answer: BiocNeighbours Utility for k-Nearest Neighbour Classification by James W. MacDonald 67k
You can easily answer this question yourself. ``` > library(BiocPkgTools) Loading required package: htmlwidgets > depdf <- buildPkgDe…
Votes
Answer: CleanUpRNAseq with a GTF that is missing mitochondria annotation data
Answer: CleanUpRNAseq with a GTF that is missing mitochondria annotation data
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A: Error in DESeqDataSet : some values in assay are not integers
A: correcting the batch effects in Limma and SVA
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