Biostar Annotationdbi

Showing : annotationdbi • reset

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3.4k

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AnnotationHub AnnotationDbi AnnotationForge pathview

6.0 years ago • updated 5 months ago Jenny Drnevich ★ 2.0k

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893

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org.Sc.sgd.db AnnotationDbi

updated 12 months ago by chase.mateusiak • 0 • written 3.0 years ago by felix.gm.ernst • 0

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284

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SingleCell AnnotationDbi

updated 5 months ago by James W. MacDonald 62k • written 5 months ago by techgirl2022 • 0

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573

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AnnotationDbi Microarray

9 months ago nhaus • 0

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427

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AnnotationDbi

updated 8 months ago by James W. MacDonald 62k • written 8 months ago by nhaus • 0

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129

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ChipDb AnnotationDbi AnnotationForge

updated 18 days ago by James W. MacDonald 62k • written 26 days ago by ahiser • 0

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286

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AnnotationDbi biomaRt Bioconductor

updated 7 months ago by Mike Smith ★ 5.9k • written 7 months ago by sautik87_sit • 0

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459

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AnnotationDbi GO clusterProfiler enrichplot ensembldb

updated 4 months ago by merv ▴ 60 • written 4 months ago by simone.nevills ▴ 10

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AnnotationDbi annotation ChIPseeker

updated 17 hours ago by James W. MacDonald 62k • written 18 hours ago by L ▴ 40

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127

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org.Hs.eg.db AnnotationDbi

updated 14 days ago by James W. MacDonald 62k • written 14 days ago by harish • 0

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737

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AnnotationDbi org.Mm.eg.db

updated 10 months ago by James W. MacDonald 62k • written 10 months ago by rl19 • 0

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228

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OrgDb AnnotationDbi

updated 3 months ago by shepherl 3.4k • written 3 months ago by Imad • 0

12 results • Page 1 of 1

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Replies

Comment: AnnotationForge::makeOrgPackageFromNCBI - ERROR to access url (NCBI FTP site) by liuchangbio ▴ 10

Hi, Thank you for your reply. I have tried to follow the advice you gave, but it still does not work. This does not look like an easy E…

Comment: TCGA: clinical data and expression data by sharifnstu1203002m • 0

Hello, I am in the same problem. I downloaded "transcriptome profiling" data of TCGA by using the Bioconductor package. I get my gene expr…

Comment: How to normalize long-read RNA-seq data for comparison with short-reads by Jonathan Göke ▴ 40

Great to hear that you are using Bambu. Yes, I think that part of your question does not have one correct answer, there are many ways in wh…

Answer: Library sizes of miRNA sequencing data and TMM normalization with Edge-R by Gordon Smyth 47k

Choosing which samples to normalize together is not dependent on library size but rather on (1) whether the tissue samples are comparable a…

Comment: Atena package - error (new user) by lalanis1 • 0

Thanks a lot, Calvo. Will run my files with revised version soon! Best regards, Lalani

Votes

Comment: How to normalize long-read RNA-seq data for comparison with short-reads

Answer: Library sizes of miRNA sequencing data and TMM normalization with Edge-R

C: Can't install TopmedPipeline Package

Comment: Question about GWASTools gdsSubset

Comment: How to normalize long-read RNA-seq data for comparison with short-reads

Awards • All

Scholar to James W. MacDonald 62k

Teacher to Michael Love 39k