Showing : GO.db • reset
1
vote
6
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149
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Does a given Bioconductor version always use the same version of a database, e.g. GO.db?
GO.db versioning
updated 15 days ago by 58k • written 15 days ago by • 0
0
votes
1
reply
243
views
how to sort y-axis category of GO result
GO.db clusterProfiler dotplot barplot
3 months ago Yang • 0
0
votes
1
reply
201
views
How to use GO.db select on *ANCESTOR *CHILDREN *PARENTS etc.
GO.db
updated 3 months ago by 58k • written 3 months ago by • 0
1
vote
6
replies
311
views
what's the difference between this two AnnotationDbi::select type in GO select
GO.db AnnotationDbi
updated 4 months ago by • 0 • written 4 months ago by ▴ 20
0
votes
1
reply
172
views
ViSEAGO
gene_ontology GOID ViSEAGO GO.db custom2GO
6 months ago jabbar_campbell • 0
2
votes
2
replies
291
views
retrieve gene IDs from GO.db GO
GO GO.db
8 months ago decppced • 0
1
vote
2
replies
312
views
Getting list of genes enriched in each of Biological process terms
GOstats Go.db GeneOntology
10 months ago MOHAMMAD • 0
2
votes
1
reply
292
views
Geno Ontology Analysis using gene symbol
GO.db Annotation Clusterprofile GeneOntology
updated 10 months ago by ▴ 160 • written 10 months ago by • 0
2
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2
replies
328
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how to use select() to retrieve GO Biological Process Ancestors?
GO.db AnnotationDbi
updated 12 months ago by 25k • written 12 months ago by ★ 3.2k
0
votes
4
replies
556
views
GO.db package can't be installed
install GO.db
updated 12 months ago by 25k • written 12 months ago by • 0
1
vote
1
reply
371
views
installing GO.bd for WGCNA
GO.db WGCNA
updated 13 months ago by 58k • written 13 months ago by • 0
0
votes
4
replies
443
views
topGO "argument is of length zero" error
GO.db topGO
updated 14 months ago by 58k • written 15 months ago by • 0
0
votes
2
replies
301
views
Can't select GO from AnnotationHub orgDB packages
GO.db AnnotationHub OrgDB
updated 18 months ago by 58k • written 18 months ago by ★ 2.0k
0
votes
1
reply
470
views
GO vs GOALL in rrvgo and GOSemSim
rrvgo GOSemSim GO.db
19 months ago Jenny Drnevich ★ 2.0k
1
vote
2
replies
399
views
Help installing clusterProfiler
clusterProfiler DO.db GO.db lazy load fail
updated 20 months ago by 58k • written 20 months ago by • 0
0
votes
4
replies
482
views
Error attaching TIN
software error GO.db TIN
updated 20 months ago by 25k • written 20 months ago by • 0
1
vote
2
replies
220
views
Relations used in GO.db GOBPANCESTOR
GO.db
updated 21 months ago by 58k • written 21 months ago by • 0
1
vote
4
replies
450
views
Trouble installing package GO.db
GO.db
updated 2.0 years ago by 58k • written 2.0 years ago by • 0
0
votes
1
reply
603
views
package 'hgu95av2.db' is not available (for R version 3.6.0)
Go.db hgu95av2.db R3.6.0
updated 2.5 years ago by 25k • written 2.5 years ago by • 0
0
votes
5
replies
2.1k
views
Cannot install GO.db for R 3.6.1
GO.db R 3.6.1 source package
updated 2.5 years ago by 25k • written 2.5 years ago by • 0
2
votes
5
replies
345
views
Cannot find more than a 100 GO:CC ids on org.Hs.eg.db
org.Hs.eg.db annota org.Hs.eg. GO.db
updated 2.6 years ago by 58k • written 2.6 years ago by • 0
0
votes
5
replies
690
views
hyperGTest not working on custom annotation package
GOstats AnnotationDbi GO.db
updated 2.9 years ago by 58k • written 2.9 years ago by • 0
1
vote
2
replies
729
views
Error with untar2 that blocks the installation of GO.db on Windows (R 3.5, Bioc 3.8) for using clusterProfiler
go.db clusterprofiler
updated 3.1 years ago by 25k • written 3.1 years ago by ▴ 950
3
votes
3
replies
570
views
source of GO ontology and GO annotations in Bioconductor for GO.db
GO ontology GO.db
updated 3.4 years ago by • 0 • written 3.4 years ago by ▴ 10
1
vote
1
reply
531
views
GO.db: searching for "top" GO term for list of terms
GO go.db
updated 3.4 years ago by 58k • written 3.4 years ago by • 0
2
votes
2
replies
572
views
GO.db source obo file?
gene ontology gostats go.db ontologies
updated 3.5 years ago by 25k • written 3.5 years ago by • 0
2
votes
2
replies
488
views
Troubles installing GO.db
go.db
updated 3.7 years ago by 25k • written 3.7 years ago by ▴ 20
3
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8
replies
1.7k
views
Problem using GOTERM[["x"]] from GO.db
GO.DB
updated 3.7 years ago by 25k • written 3.7 years ago by ▴ 10
0
votes
1
reply
924
views
Issue installing packages ATACseqQC and GO.db
GO.db biocinstaller package installation atacseqqc
updated 3.8 years ago by ★ 1.3k • written 3.8 years ago by • 0
0
votes
0
replies
567
views
GOstats install Error : .onLoad failed in loadNamespace() for 'GO.db'
gostats go.db
3.9 years ago crafy • 0
0
votes
3
replies
572
views
How to annotate gene ontologies based on Gene Symbols in R
GO.db annotate
3.9 years ago dusan.petrovic • 0
0
votes
1
reply
1.7k
views
GO.db failure to install
software error go.db
4.0 years ago matt.a.bennett25890 • 0
0
votes
1
reply
846
views
GO.db, pfma.db, KEGG.db
pfam go.db kegg.db
updated 4.3 years ago by 25k • written 4.3 years ago by • 0
0
votes
1
reply
1.5k
views
GO.db won't install for using goseq package
GO.db goseq package installation error
updated 4.4 years ago by 25k • written 4.4 years ago by • 0
1
vote
10
replies
1.5k
views
Error installing Annaffy
affy annaffy go.db kegg.db
updated 4.8 years ago by 58k • written 4.8 years ago by • 0
0
votes
3
replies
2.4k
views
ERROR: dependency 'AnnotationDbi' is not available for package 'GO.db'
bioconductor R go.db annotationdbi dependency
4.9 years ago Sidi.Ma • 0
0
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2
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1.0k
views
GO.db will not download
GO.db
4.9 years ago MOD • 0
0
votes
1
reply
1.2k
views
Windows fails to install package from source 'tar.gz', e.g., "GO.db"
go.db WGCNA
updated 4.9 years ago by 25k • written 4.9 years ago by ▴ 10
1
vote
5
replies
3.8k
views
can not able to install go.db
go.db
updated 5.2 years ago by 25k • written 5.2 years ago by • 0
0
votes
1
reply
615
views
I cannot install the package GO.db
GO.db
5.2 years ago doncheng1 • 0
0
votes
3
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921
views
GO.db installation error
GO go.db
5.3 years ago cananhas • 0
1
vote
1
reply
1.1k
views
How to install old version of GO.db in R
GO.db R
updated 5.5 years ago by 25k • written 5.5 years ago by • 0
1
vote
2
replies
1.8k
views
Installation Error- GO.db
GO.db
updated 5.5 years ago by 58k • written 5.5 years ago by ▴ 10
0
votes
0
replies
1.7k
views
Trouble with GO.db - installation of package GO.db had non-zero exit status
software error GO.db
5.7 years ago christin.berlin • 0
0
votes
1
reply
831
views
Gene Ontolology and Annotation
Gene Ontolology Annotation GO.db org.Sc.sgd.db org.Hs.eg.db
updated 6.0 years ago by ▴ 760 • written 6.0 years ago by • 0
4
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2
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1.2k
views
mapIds to get GO terms
annotationdbi go.db
updated 6.1 years ago by 25k • written 6.1 years ago by ▴ 10
2
votes
6
replies
3.0k
views
DiffBind installation doesn't work
diffbind go.db
6.7 years ago • updated 6.5 years ago Gary ▴ 20
4
votes
2
replies
3.4k
views
Cannot load or update GO.db
GO.db bioclite
6.7 years ago Steve Pederson ▴ 170
0
votes
1
reply
885
views
GO.db/GOSim bugged or my bad?
go.db software error bug
updated 6.7 years ago by 15k • written 6.7 years ago by ▴ 10
0
votes
1
reply
1.3k
views
Error attaching GO.db package
GO.db loadnamespace annotation chippeakanno
updated 6.9 years ago by ★ 8.2k • written 6.9 years ago by • 0
50 results • Page 1 of 1
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Comment: DiffBind dba.count Error in if (sum(tokeep) < length(tokeep)) by tjhwangxiong • 0
``` https://drive.google.com/drive/folders/1787thVatZpt_KFrfXY-aXV1m0FRm8Mhm?usp=sharing ``` Thanks for your reply. I have uploaded the fil…
Comment: Trying to follow a gene set analyisis in R by Michael Love 35k
No I can’t help with exercises. Just to be clear I’m not affiliated with Harvard and have no supported effort in relation to the edx classe…
Answer: Problems to find the pvalues via rowttests by Gordon Smyth 44k
Ordinary t-tests aren't recommended for genomic analyses because they have poor power and higher false discovery rates. Using the limma p…
Answer: How to insert a qvalues column in a dataframe with pvalues in R by Gordon Smyth 44k
Here and in a previous post, it seems you're not using recommended Bioconductor workflows for Affymetrix microarrays. If you used a standar…
Comment: Trying to follow a gene set analyisis in R by leonardorosas2001 • 0
Thank you. I hope I can still let you know if I have issues with your exercises. They are very challenging but useful! :)
Votes
Answer: Problems to find the pvalues via rowttests
A: How to use subSeq with DNAStringSet and information of GroupedIRanges?
A: How to use subSeq with DNAStringSet and information of GroupedIRanges?
Annotating GRanges with TxDb gene models using plyranges
plyranges select() when a metadata column is shared with core variable
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