updated 5 months ago by
ATpoint
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written 5 months ago by
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updated 14 months ago by
James W. MacDonald
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written 14 months ago by
Robert Castelo
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Answer: Log2foldchange strange behavior
by
ATpoint
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The `results()` output you show is perfectly in line with the oputput of `plotCounts()`, hence it is not a DESeq2 issue. UBE3A is higher in…
Comment: DeSeq Strategies for run to run Replication
by
i.c.denhond
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0
Dear Michael,
could you please comment on how to properly apply a vst transformation to a new dataset (in this case, left-out samples)? I …
Comment: Log2foldchange strange behavior
by
RambakKulit
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Okay, I'm attaching those now. Just to provide a bit more context for the results below: I downloaded both count and TPM data from the GTEx…
Comment: Log2foldchange strange behavior
by
ATpoint
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4.8k
This cannot be answered here like this. Your results tables are not direct DESeq2 output, maybe it's a merging error during generation of t…
Comment: RE:proper pooling design
by
bicecac533
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I look forward to reading more articles like this! [Stickman Boost][1]
[1]: https://stickmanboost.com
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