Bioconductor Batch-effect

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BatchQC RNA-seq R Shiny batch-effect

5.4 years ago manninm • 0

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edgeR batch-effect RNA-seq read counts ngs

updated 6.7 years ago by Aaron Lun ★ 29k • written 6.7 years ago by Roman ▴ 20

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batch-effect ruvseq

updated 7.9 years ago by James W. MacDonald 68k • written 7.9 years ago by llo ▴ 10

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rna-seq batch-effect combat scran sva

updated 8.0 years ago by Aaron Lun ★ 29k • written 8.0 years ago by firestar ▴ 20

4 results • Page 1 of 1

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Comment: Visualization of Functional Enrichment Result with enrichplot: How to control la by zhaoqiansun0592 • 0

Wow, this is super helpful! I always struggle with label sizes in enrichplot. Glad to see a solution using gginnards([Pasjans][1]) and ggre…

Comment: Could we detect difference at pathway level but not significant different at gen by zhaoqiansun0592 • 0

Interesting question! It's cool that ChatGPT4 gave such a helpful answer. I've also been wondering if pathways([space waves][1]) can show d…

Comment: Perform gene set enrichment analysis using fgsea on two conditions that don't ha by zhaoqiansun0592 • 0

Good to know there are workarounds for these tricky [doodle baseball][1]! Thanks for sharing the tips! [1]: https://doodle-baseball.cc/

Comment: GO.db and others package Download failure by James W. MacDonald 68k

Also, you never need to use anything but `BiocManager::install` to install any package, which has the beneficial side effect of ensuring th…

Comment: GO.db and others package Download failure by James W. MacDonald 68k

Yes. Your packages have odd Y version numbers (where the version is X.Y.Z). That means they are devel packages (release versions have even …

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Comment: readDNAStringSet with non DNA characters

Comment: Guidance on limma for pseudobulk scRNA-seq with multi-factor design

Answer: Guidance on limma for pseudobulk scRNA-seq with multi-factor design

Comment: Guidance on limma for pseudobulk scRNA-seq with multi-factor design

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