Bioconductor Batch-effect

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BatchQC RNA-seq R Shiny batch-effect

5.4 years ago manninm • 0

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edgeR batch-effect RNA-seq read counts ngs

updated 6.7 years ago by Aaron Lun ★ 29k • written 6.7 years ago by Roman ▴ 20

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batch-effect ruvseq

updated 7.8 years ago by James W. MacDonald 68k • written 7.8 years ago by llo ▴ 10

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rna-seq batch-effect combat scran sva

updated 7.9 years ago by Aaron Lun ★ 29k • written 7.9 years ago by firestar ▴ 20

4 results • Page 1 of 1

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Comment: EuroBioC2024 abstract submission is open! by Finnianfly • 0

What specific requirements should be noted when preparing abstracts for presentation formats such as short talks, package demos, or posters…

Comment: Length of 'dimnames' [1] not equal to array extent by Francesco Silvestro • 0

Resolved the error message!

Comment: WGCNA analysis on RNAseq and proteoimcs data by sum31278 • 0

Hi sagigordon, Can you share how you performed WGCNA analysis for proteomics data? Thanks

Comment: European Bioconductor Conference 2023 planning by inadequate.peacock.iiag • 0

I once faced a dilemma similar to this when coordinating a smaller local event; despite initial hesitation, I learned invaluable skills and…

Comment: ROAST compare results with complex design by Gordon Smyth 52k

It's also worth pointing out that the syntax for `camera` and `mroast` is the same, so I wonder how OP did the earlier `camera` analysis.

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Answer: ROAST compare results with complex design

How to account for solvent controls in DESeq2 when comparing follicular vs luteal phase?

Answer: How to account for solvent controls in DESeq2 when comparing follicular vs lutea

Comment: Using DESeq2 on single cell RNA Seq data of same cell type but different conditi

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