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bayespeak
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[bug] BayesPeak cannot deal with RangedData input
BayesPeak
bug
7.8 years ago
balwierz
▴ 40
1
vote
3
replies
1.1k
views
Error in bayespeak function importing data
bayespeak
8.8 years ago
Reed
▴ 10
8
votes
9
replies
6.2k
views
ChIPseq-style peak calling for paired-end sequencing?
Chipseq
DNAseq
ATAC
bayespeak
narrowpeaks
updated 9.0 years ago by
Gordon Smyth
50k • written 9.0 years ago by
samuel collombet
▴ 140
0
votes
8
replies
2.0k
views
chip-seq data
ChIPSeq
chipseq
BayesPeak
ChIPSeq
chipseq
BayesPeak
11.7 years ago
John linux-user
▴ 210
0
votes
1
reply
1.1k
views
Question about ChIPpeakAnno R package
AnnotationData
annotate
ChIPpeakAnno
BayesPeak
AnnotationData
annotate
ChIPpeakAnno
11.8 years ago
Julie Zhu
★ 4.3k
0
votes
1
reply
956
views
Upgrade bioconductor to version 2.6
BayesPeak
BayesPeak
12.7 years ago
Mary Ellen Fitzpatrick
▴ 20
0
votes
7
replies
1.9k
views
error in bayespeak function
ChIPSeq
GO
BSgenome
BSgenome
chipseq
BayesPeak
ChIPSeq
GO
BSgenome
BSgenome
chipseq
updated 12.8 years ago by
Jonathan Cairns
▴ 130 • written 12.8 years ago by
Andreia Fonseca
▴ 810
0
votes
1
reply
1.0k
views
BayesPeak and RangedData obj output
BayesPeak
BayesPeak
updated 13.5 years ago by
Jonathan Cairns
▴ 130 • written 13.5 years ago by
Binbin Liu
▴ 30
0
votes
4
replies
1.6k
views
BayesPeak segfault woes
BayesPeak
BayesPeak
updated 14.0 years ago by
Jonathan Cairns
▴ 130 • written 14.0 years ago by
Tim Rayner
▴ 270
9 results • Page
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Comment: Ensembl plants at annotationHub?
by
Daniele
• 0
Hi, I'm using Ensembl Plants release 59 with the IWGSC RefSeq v1.1 gene annotation. Thanks a lot for replying so quickly!
Comment: Numerical differences in DESeq2 output depending on different design matrix cons
by
swbarnes2
★ 1.4k
If you restrict yourself to, say, genes with a baseMean > 50, are the numerical differences between the two designs significant?
Comment: DESeq2- Mysterious interaction suppresses DEGs
by
shaunpeterson
• 0
The images I tried to attach didn't attach. Here is the PCA (MDS) of all the samples, with the Cortex outlier highlighed. ![enter image de…
Comment: STRINGdb : error with string_db$plot_network()
by
damian.szk
▴ 80
ok. Forcing non-secure protocol should not be needed anymore, due to changes in the underlying library. However, I will look at why "HTTP" …
Comment: STRINGdb : error with string_db$plot_network()
by
ninidea
• 0
> Does the vignette produce the same error? No. Anyway, I finally solved the problem. I don't know why, but I removed: protocol='http' fr…
Votes
Answer: Error while installing BiocManager::install("org.Vdahliae.eg.db")
Comment: How can I create a eigencorplot of pca created from deseq2 object with PCAtools
Answer: Importing a GraphNEL into Cytoscape with RCy3 with error: "Error in cyrestPUT(pa
Answer: Importing a GraphNEL into Cytoscape with RCy3 with error: "Error in cyrestPUT(pa
Rsubread counting peaks ATACseq
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Vincent J. Carey, Jr.
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shepherl
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Johannes Rainer
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