Bioconductor Beadarraysnp

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crlmm illumina beadarraysnp

updated 10.9 years ago by Matthew Ritchie ▴ 1000 • written 10.9 years ago by René ▴ 40

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SNP Normalization GO PROcess beadarraySNP SNP Normalization GO PROcess beadarraySNP

15.7 years ago Jonas Mandel ▴ 10

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beadarraySNP beadarraySNP

16.5 years ago Boris Umylny ▴ 120

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SNP Normalization Cancer Colon PROcess beadarraySNP copynumber SNP Normalization Cancer

16.7 years ago Dmitri Mouradov ▴ 20

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geneplotter affy affyio beadarray quantsmooth beadarraySNP geneplotter affy affyio

updated 18.3 years ago by Matt Ritchie ▴ 460 • written 18.3 years ago by Elizabeth McClellan ▴ 10

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Biobase annotate affy affyio beadarray quantsmooth beadarraySNP lumi Biobase annotate

18.5 years ago Johnstone, Alice ▴ 410

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geneplotter affy affyio beadarray quantsmooth beadarraySNP geneplotter affy affyio

updated 18.5 years ago by Mark Dunning ▴ 320 • written 18.5 years ago by Krys Kelly ▴ 270

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geneplotter affy affyio beadarray quantsmooth beadarraySNP geneplotter affy affyio

updated 18.5 years ago by Mark Dunning ▴ 320 • written 18.5 years ago by Johnstone, Alice ▴ 410

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geneplotter affy affyio beadarray quantsmooth beadarraySNP geneplotter affy affyio

updated 18.5 years ago by Mike Smith ▴ 40 • written 18.5 years ago by Krys Kelly ▴ 270

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Microarray Annotation geneplotter affy affyio beadarray quantsmooth beadarraySNP affy

updated 18.6 years ago by Matt Ritchie ▴ 460 • written 18.6 years ago by Keith James ▴ 10

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Comment: Making a Full Rank Model for Allele-Specific Expression with DESeq2 by Gordon Smyth 53k

My apologies, I forgot that `design.group` is not included in the final matrix, because the baseline group effects are already captured by …

Answer: Bile acid analysis with limpa by Gordon Smyth 53k

I am not familiar with targeted HPLC-MS and I don't know what you mean by "peak areas". If it produces standard format mass spec data from …

Comment: How to convert .raw data for use in xcms by TikTsossa33ssalpc • 0

It sounds like your mzML conversion has a CV term that XCMS doesn t recognize, which often happens with newer vendor formats or outdated ms…

Comment: Boolean Gate Combination for Any 2 Positive Events in flowWorkspace by TikTsossa33ssalpc • 0

To calculate event numbers for boolean combinations in flow cytometry, you should use a logic gating tool or a script that processes popula…

Comment: Making a Full Rank Model for Allele-Specific Expression with DESeq2 by chp265 • 0

Confirming my understanding after executing the code provided: this is similar to a design formula of `~0+mouse+group+group:allele`, except…

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Comment: limpa analysis advice

Answer: When to use edgeR or limma

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