Bioconductor Beadarraysnp

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crlmm illumina beadarraysnp

updated 10.1 years ago by Matthew Ritchie ▴ 1000 • written 10.1 years ago by René ▴ 30

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SNP Normalization GO PROcess beadarraySNP SNP Normalization GO PROcess beadarraySNP

14.9 years ago Jonas Mandel ▴ 10

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beadarraySNP beadarraySNP

15.7 years ago Boris Umylny ▴ 120

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SNP Normalization Cancer Colon PROcess beadarraySNP copynumber SNP Normalization Cancer

15.9 years ago Dmitri Mouradov ▴ 20

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geneplotter affy affyio beadarray quantsmooth beadarraySNP geneplotter affy affyio

updated 17.4 years ago by Matt Ritchie ▴ 460 • written 17.4 years ago by Elizabeth McClellan ▴ 10

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Biobase annotate affy affyio beadarray quantsmooth beadarraySNP lumi Biobase annotate

17.6 years ago Johnstone, Alice ▴ 410

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geneplotter affy affyio beadarray quantsmooth beadarraySNP geneplotter affy affyio

updated 17.6 years ago by Mark Dunning ▴ 320 • written 17.6 years ago by Krys Kelly ▴ 270

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geneplotter affy affyio beadarray quantsmooth beadarraySNP geneplotter affy affyio

updated 17.6 years ago by Mark Dunning ▴ 320 • written 17.6 years ago by Johnstone, Alice ▴ 410

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geneplotter affy affyio beadarray quantsmooth beadarraySNP geneplotter affy affyio

updated 17.7 years ago by Mike Smith ▴ 40 • written 17.7 years ago by Krys Kelly ▴ 270

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Microarray Annotation geneplotter affy affyio beadarray quantsmooth beadarraySNP affy

updated 17.8 years ago by Matt Ritchie ▴ 460 • written 17.8 years ago by Keith James ▴ 10

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Comment: Package developing and interoperation with Bioconductor by slizchap • 0

Thank you so much for your answer. This was very useful, I will optimize my functions so they can handle SE objects.

Comment: Package developing and interoperation with Bioconductor by slizchap • 0

Thank you so much for your answer, very useful!

Comment: Error in H5Dclose(h5dataset) when trying to read in kallisto h5 files by Mike Smith ★ 6.6k

Tricky to try and debug this without some example files to work with. Can you provide the output of `traceback()` called immediately after…

Answer: Mismatch between Illumina Mouse Methylation BeadChip annotation and genome brows by James W. MacDonald 68k

The annotation data that is provided for this array is simply a repackaging of data that we get from Illumina, so any apparent inconsistenc…

Answer: Package developing and interoperation with Bioconductor by James W. MacDonald 68k

Ideally you would have S4 methods that dispatch on the incoming data structure, so people could call your main function using a `data.frame…

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Comment: ComBat with repeated measures

Answer: Package developing and interoperation with Bioconductor

Answer: CpGs with genomic positions greater than the chromosome size in EPICv2?

Answer: Explannation for ROAST results

A: How DiffBind run PCA based on peak data?

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