Bioconductor Beadarraysnp

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crlmm illumina beadarraysnp

updated 9.7 years ago by Matthew Ritchie ▴ 1000 • written 9.7 years ago by René ▴ 30

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SNP Normalization GO PROcess beadarraySNP SNP Normalization GO PROcess beadarraySNP

14.6 years ago Jonas Mandel ▴ 10

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beadarraySNP beadarraySNP

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SNP Normalization Cancer Colon PROcess beadarraySNP copynumber SNP Normalization Cancer

15.5 years ago Dmitri Mouradov ▴ 20

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geneplotter affy affyio beadarray quantsmooth beadarraySNP geneplotter affy affyio

updated 17.1 years ago by Matt Ritchie ▴ 460 • written 17.1 years ago by Elizabeth McClellan ▴ 10

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Biobase annotate affy affyio beadarray quantsmooth beadarraySNP lumi Biobase annotate

17.3 years ago Johnstone, Alice ▴ 410

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geneplotter affy affyio beadarray quantsmooth beadarraySNP geneplotter affy affyio

updated 17.3 years ago by Mark Dunning ▴ 320 • written 17.3 years ago by Krys Kelly ▴ 270

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geneplotter affy affyio beadarray quantsmooth beadarraySNP geneplotter affy affyio

updated 17.3 years ago by Mark Dunning ▴ 320 • written 17.3 years ago by Johnstone, Alice ▴ 410

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geneplotter affy affyio beadarray quantsmooth beadarraySNP geneplotter affy affyio

updated 17.3 years ago by Mike Smith ▴ 40 • written 17.3 years ago by Krys Kelly ▴ 270

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Microarray Annotation geneplotter affy affyio beadarray quantsmooth beadarraySNP affy

updated 17.4 years ago by Matt Ritchie ▴ 460 • written 17.4 years ago by Keith James ▴ 10

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Answer: Deseq2 res Function by Michael Love 43k

> Does this mean the young and KO groups were numerators and denominators in the analysis, respectively? Read over the vignette and work…

Answer: ANOVA like approach of edgeR by Gordon Smyth 51k

You need to clarify whether interactions are present for the two factors in your study. In the two factors do not interact, then the code y…

Answer: Create Illmina bead summary data by Gordon Smyth 51k

GenomeStudio produces IDAT files that you can read using the `read.idat` function in limma. That is the recommended way to read GenomeStudi…

Comment: Help with RSEM counts: do I transpose matrix? by NB • 0

OK thank you.

Comment: Help with RSEM counts: do I transpose matrix? by James W. MacDonald 67k

You can ask here, but please read the `DESeq2` vignette first, which should answer most questions.

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Answer: Deseq2 res Function

Answer: BiocNeighbours Utility for k-Nearest Neighbour Classification

Answer: ANOVA like approach of edgeR

Comment: ANOVA like approach of edgeR

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