Showing : biodist • reset
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ExpressionSet Time-series correlation stuff
bioDist bioDist
updated 9.3 years ago by 59k • written 9.3 years ago by ▴ 90
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3
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Fwd: How to decide which distance metric to use for micoarray data clustering?
Microarray Clustering bioDist Microarray Clustering bioDist
updated 12.6 years ago by 13k • written 12.6 years ago by ▴ 940
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Converting \"data.frame\" to appropriate format for tau.dist() in bioDist library
bioDist bioDist
updated 8.8 years ago by ▴ 470 • written 8.8 years ago by ★ 12k
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607
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KLdist.matrix
bioDist bioDist
updated 10.9 years ago by 13k • written 10.9 years ago by ▴ 10
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Questions regarding hclust parameters and output
Clustering bioDist Clustering bioDist
12.7 years ago Dana Sevak ▴ 10
5 results • Page 1 of 1
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Comment: performing the differential binding in ChIP-seq by Bogdan ▴ 640
I am asking the question because we have two sets of ChIP-seq data for a histone mark (lets' say H3K4me1) that were generated with : <> an…
Comment: performing the differential binding in ChIP-seq by Bogdan ▴ 640
Thank you. Yes, DiffBind might be a good choice shall we have replicates per sample. Another choice is MA-norm2. Any other well-tested sug…
Comment: Error using read.ilmn and neqc by Gordon Smyth 45k
I edited the title of your question to be more specific.
Answer: Using limma to read Illumina HT-12 v4 data by Gordon Smyth 45k
It seems clear that you haven't exported the correct intensity data from GenomeStudio, and I think you recognize that yourself in your ques…
Answer: performing the differential binding in ChIP-seq by etiennedanis • 0
DiffBind https://bioconductor.org/packages/release/bioc/html/DiffBind.html
Votes
Comment: Using vegan::betadisper for determing if I subset my design for DESeq2
Answer: How to best visualize multi-level transcriptomics experiment data?
A: Interpreting results of sample-to-sample PCA/clustering and changing assignment
C: DESeq2 - Differences between plotCounts and normalized counts
C: DESEq2 - Change reference level change "Contrasts" results
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