Bioconductor Bioma

Showing : bioma • reset

votes

replies

362

views

biomaRt bioma

updated 7 months ago by Mike Smith ★ 6.2k • written 7 months ago by Luca • 0

votes

821

views

biomaRt bioma

updated 7 months ago by Mike Smith ★ 6.2k • written 7 months ago by Alessia • 0

votes

831

views

bioma biomaRt

updated 15 months ago by Basti ▴ 740 • written 15 months ago by Riley Qiu • 0

votes

3.4k

views

biomaRt Bioma

19 months ago floriandeckert ▴ 30

votes

2.3k

views

biomaRt bioma

updated 2.2 years ago by Mike Smith ★ 6.2k • written 2.2 years ago by analeonpalacio ▴ 10

5 results • Page 1 of 1

Recent ...

Replies

Comment: Problem making orgdb package for bacteria (Pseudomonas) using annotation hub and by James W. MacDonald 64k

This is something you should be able to work out on your own. When you get an error, you have to read it and try to figure out what it mean…

Comment: Subtracting INPUT reads from ChIP read counts. by ann-sophie.gironne • 0

Hi Rory! I'm trying to scale my bigwig files so the visualization on IGV matches what the DiffBind analysis results, being that the sample…

Comment: Ensembl down??? by James W. MacDonald 64k

Yup, they seem to be down. What exactly are you trying to do? There may be other options.

Answer: Result from GSEA for non-model organism not as expected by Aastha Kapoor • 0

I have a similar issue, I have transcriptome data of an inhouse sequenced bacterial genome. I made the database for that bacteria using mak…

Comment: Timely differentially expressed genes by triZZla • 0

Thanks, but what is the lowest that you have seen in such circumstances ? And did you have systematically calculated it actually or just re…

Votes

Comment: Ensembl down???

Answer: Limma/DESeq2 for unbalanced nested design (paired samples)

Result from GSEA for non-model organism not as expected

Comment: DESeq2 estimateSizeFactors iterate takes too long

Answer: DESeq2 estimateSizeFactors iterate takes too long

Awards • All

Scholar to Mike Smith ★ 6.2k

Scholar to Hervé Pagès 16k