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#BioNERO BioNERO Cystoscope

updated 14 months ago by Fabricio Almeida-Silva ▴ 40 • written 14 months ago by Hasani • 0

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BioNERO

8 months ago matevz.likar • 0

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491

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GRN BioNERO

updated 14 months ago by Fabricio Almeida-Silva ▴ 40 • written 15 months ago by majeedaasim • 0

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plot_expression_profile BioNERO

6 months ago Christopher • 0

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912

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BioNERO

updated 19 months ago by Fabricio Almeida-Silva ▴ 40 • written 19 months ago by Biologist • 0

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BioNERO Pviz

16 months ago • updated 14 months ago zxd95 • 0

6 results • Page 1 of 1

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Comment: Can I trust the differential expression analysis when the two groups overlap on by BioinfGuru ▴ 30

No worries, wish I could be more help. Plotly provide a [3-D plot][1] function that's pretty simple (the two you did are still 2-D plots, t…

Comment: Can I trust the differential expression analysis when the two groups overlap on by Michael Love 42k

If you manually compute PCA on VST data, what are the top 5 genes contributing to PC1? https://github.com/thelovelab/DESeq2/blob/devel/R/p…

Comment: Can I trust the differential expression analysis when the two groups overlap on by Eric Katagirya • 0

I created a DESeqDataSet object using DESeqDataSetFromMatrix function. I don't anticipate any mismatching or mixup of sampleIDs.

Answer: Assymetric MA plot with no overall trend by Michael Love 42k

> so many upregulated genes vs. downregulated, which I think is worrying Take a look at the plotCounts for a couple of the up-regulated …

Comment: Can I trust the differential expression analysis when the two groups overlap on by Michael Love 42k

I'm wondering about sample table mixup. How have you merged your sequencing data with the phenotype data (`colData`)?

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Ensembl 112 has been released.

A: Diffbind results - non uniform width

A: Different logFC (log2foldchange) values for genes from limma-voom and other too

Answer: Error EPICv2 ChAMP

Comment: Store output of matchPWM()

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