Bioconductor Biostrings

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132

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biostrings Biostrings

updated 2 days ago by James W. MacDonald 65k • written 2 days ago by mat149 ▴ 70

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136

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Biostrings GenomeAssembly

updated 5 weeks ago by James W. MacDonald 65k • written 5 weeks ago by Karen • 0

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221

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Biostrings

5 weeks ago ramiro.barrantes ▴ 10

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429

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Biostrings

8 weeks ago • updated 6 weeks ago Gerhard Thallinger ▴ 180

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160

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Biostrings

3 months ago Angela Michalichyn • 0

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772

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SequenceMatching Biostrings DifferentialExpression Proteome

updated 7 months ago by Hervé Pagès 16k • written 7 months ago by nromerov • 0

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530

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Biostrings

updated 8 months ago by James W. MacDonald 65k • written 8 months ago by rogerb • 0

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706

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Microarray Alignment Biostrings

written 12 months ago by sandmann.t ▴ 70

8 results • Page 1 of 1

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Answer: Once again a "Model matrix not full rank" by swbarnes2 ★ 1.3k

Replicate numbers, like the 1 in control_1 are fine in sample names, but never add them to anything else in colData. From the computer's p…

Answer: limma Intercept vs No-intercept models completely changing DMR results? by Gordon Smyth 50k

I'll add a little bit of general advice to James' answer. You seem to have the misunderstanding that you can change the design matrix but …

Answer: package goseq seems to be not available on the latest version of R by Gordon Smyth 50k

It is true that goseq isn't available for Bioc 3.19. That is because goseq depends on txbmaker, which is itself not yet available for Bioc…

Answer: limma Intercept vs No-intercept models completely changing DMR results? by James W. MacDonald 65k

This part: ``` design_intercept <- model.matrix(~Alt+Sex+Age+PC1, data=targets_Sherpa) colnames(design_intercept) <- c("AltSHP_LA","Al…

Comment: CombineArrays for EPIC and EPIC V2 by Kim • 0

Thank you Tim, this is a great help in getting me started!

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Answer: limma Intercept vs No-intercept models completely changing DMR results?

Answer: CombineArrays for EPIC and EPIC V2

Answer: Too many significant genes when integrating gtex and tcga

Comment: Too many significant genes when integrating gtex and tcga

A: Print Differentially Expressed Exons From Dexseq Results

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