Showing : bsgenomeforge • reset
1
vote
3
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How to construct a BSgenome object from a custom genome assembly using BSgenomeForge?
BSgenome BSgenomeForge
updated 6 weeks ago by 68k • written 7 weeks ago by ▴ 80
2
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5
replies
1.8k
views
Unable to install a forged BSgenome package
BSgenomeForge
updated 6 months ago by 68k • written 6 months ago by • 0
0
votes
1
reply
535
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forgeBSgenomeDataPkgFromNCBI: Error in find_NCBI_assembly_ftp_dir unable to find FTP dir
BSgenomeForge non-modelorganism unabletofindFTPdir
updated 11 months ago by 16k • written 11 months ago by • 0
0
votes
0
replies
665
views
Error ambiguity characters in sequences
BSgenomeForge
2.1 years ago Bruno • 0
0
votes
4
replies
2.9k
views
BSgenome for ensembl mm10
BSgenomeForge BSgenome
updated 2.4 years ago by 68k • written 2.4 years ago by • 0
2
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4
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2.4k
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BSGenome Forge for non-model organism
BSGenomeForge BSGenome
updated 4.6 years ago by 16k • written 4.6 years ago by • 0
0
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9
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2.3k
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Unable to generate feature vector with custom genome in cleanUpdTSeq
cleanUpdTSeq BSgenome BSgenomeForge
updated 6.7 years ago by ★ 4.3k • written 6.7 years ago by • 0
0
votes
2
replies
1.5k
views
Error - BSgenomeForge function
BSgenomeForge
9.1 years ago • updated 9.0 years ago Vijay Lakhujani • 0
8 results • Page 1 of 1
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Comment: "Watched Tags" are being erased rather than updated by shepherl 4.2k
I can reproduce this and have opened an issue on the code base https://github.com/Bioconductor/support.bioconductor.org/issues/112
Comment: "Watched Tags" are being erased rather than updated by shepherl 4.2k
we can investigate this issue. thank you for bringing it to our attention
Comment: deseq2 filter the low counts by Michael Love 43k
> But within each comparison (contrast), if I trace some DEGs back to the original salmon merged gene counts (or even to normalised counts)…
Comment: deseq2 filter the low counts by empty_mt • 0
Thank you for you suggestion to look at the pre-filtering section in the DESeq2 vignettes - am I missing something? I have 6 treatments, …
Comment: deseq2 filter the low counts by Michael Love 43k
Have you seen this part: https://bioconductor.org/packages/release/bioc/vignettes/DESeq2/inst/doc/DESeq2.html#pre-filtering
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Bioconductor 3.22 Released!
Comment: "Watched Tags" are being erased rather than updated
Comment: deseq2 filter the low counts
Answer: DESeq2 interactions
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