Bioconductor CBioPortalData

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cBioPortalData

20 months ago ryan.hagenson • 0

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RaggedExperiment cBioPortalData

updated 20 months ago by Marcel Ramos 690 • written 20 months ago by ryan.hagenson • 0

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cBioPortalData

updated 5 weeks ago by Marcel Ramos 690 • written 5 weeks ago by Astrid Deschênes • 0

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766

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cBioPortalData

updated 9 months ago by Ndimensional ▴ 20 • written 3.0 years ago by andreas.wernitznig • 0

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MultiAssayExperiment cBioPortalData

updated 3.0 years ago by Kevin Blighe ★ 3.9k • written 3.0 years ago by Javier • 0

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249

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cBioPortalData

6 months ago karam • 0

6 results • Page 1 of 1

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Comment: Deseq2. decontXcounts not integers. Useful alternative? by camp ▴ 10

Yes, @atpoint is correct. decontX decontaminated counts are not integers due to the way the variation inference algorithm works, but you ca…

Comment: Deseq2. decontXcounts not integers. Useful alternative? by ATpoint ★ 4.0k

I do not know this decontamination tool you use but generally: If these counts are basically "corrected" raw counts in the sense that they'…

Answer: Improving the design matrices vignette in RNAseq123 by Gordon Smyth 50k

Thanks to Shian Su, we have confirmed that the problem in the design matrices vignette html is caused by a bug in knitr 1.44 (to do with sp…

Comment: Opposite sign of LFC in count plots of DEGs (DESeq2) by winwater0928 • 0

Thank you for your comment! I'll review my code from top to bottom.

Comment: Math expression in shapeCustom legend in EnhancedVolcano by James W. MacDonald 65k

So basically you are using HTML markup to set your subscripts and whatnot, and then `element_markdown` does the rest.

Votes

Comment: Deseq2. decontXcounts not integers. Useful alternative?

Comment: Opposite sign of LFC in count plots of DEGs (DESeq2)

biomaRt error: database disk image is malformed

Comment: biomaRt : No lock file for BiocFileCache

Answer: Cross-species analysis - how to compute the mid parent value?

Awards • All

Scholar to James W. MacDonald 65k

Supporter to JKim • 0