Bioconductor Cage

Showing : cage • reset

vote

replies

1.2k

views

cager cage ctss

updated 4.0 years ago by Charles Plessy ▴ 180 • written 4.8 years ago by sarac ▴ 20

votes

replies

2.1k

views

CAGEr cage

updated 2.6 years ago by jingxian.18 • 0 • written 8.2 years ago by Vivek.b ▴ 100

votes

replies

824

views

CAGEfightR CAGE

updated 4.8 years ago by maltethodberg ▴ 180 • written 4.8 years ago by sarac ▴ 20

votes

replies

908

views

TSS promoter cage cager

5.4 years ago bharata1803 ▴ 60

votes

749

views

CAGEFightR CAGE CTSS

5.0 years ago July • 0

5 results • Page 1 of 1

Recent ...

Replies

Comment: DESeq2 a lot of genes showing up as differentially expressed that only have 1 sa by Michael Love 41k

Sorry, for questions about statistical analysis plan and interpretation of results, I recommend to work with a local statistician or someon…

Answer: Fold change calculation in Diffbind vs. DESEQ2? by Michael Love 41k

There was a recent DiffBind question on the support site that noticed the same thing, try searching recent DiffBind posts.

Answer: Timecourse RNASeq analysis by Michael Love 41k

There are many choices for time course, and we have an example in our workflow (rnaseqGene). Otherwise, I recommend to consult a local …

Answer: Padj "NA" with thousands of low count although the raw read counts are quite lar by Michael Love 41k

You can either turn off independent filtering in `results` or use `ihw` see the vignette.

Comment: Why p value inconsistent when using different number of pathway score? by Chris • 0

Thanks Gordon for a detail guide! You have a great memory of time. GSVA also do differential express at pathway level (https://bioconductor…

Votes

Comment: Why p value inconsistent when using different number of pathway score?

Nominations for Bioconductor Awards 2024!

Answer: Improving the design matrices vignette in RNAseq123

Answer: Perform gene set enrichment analysis using fgsea on two conditions that don't ha

Awards • All

Centurion to Chris • 0

Commentator to Leonard Goldstein ▴ 200

Popular Question to Matthew Ritchie ▴ 1000

Scholar to alserg ▴ 260