Biostar CAGEr

Showing : CAGEr • reset

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411

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CAGEr

updated 9 months ago by Charles Plessy ▴ 170 • written 11 months ago by Sergio • 0

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375

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CAGEr

updated 9 months ago by Charles Plessy ▴ 170 • written 16 months ago by MatteoP ▴ 10

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195

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CAGEr

16 months ago MatteoP ▴ 10

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541

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CAGEr

updated 11 months ago by Charles • 0 • written 23 months ago by leehami7407 • 0

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348

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CAGEr quantilePositions

2.2 years ago mirkocelii ▴ 40

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697

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cager cage ctss

updated 2.2 years ago by Charles Plessy ▴ 170 • written 3.1 years ago by sarac ▴ 20

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332

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CAGEr CAGEset quantile CAGEexp

2.2 years ago mirkocelii ▴ 40

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474

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CAGEr IRanges aggregateTagClusters

2.3 years ago mirkocelii ▴ 40

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632

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CTSS clustering tag per million tag counts CAGEr

updated 8 months ago by Charles Plessy ▴ 170 • written 3.2 years ago by regcastillo1990 • 0

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436

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TSS promoter cage cager

3.7 years ago bharata1803 ▴ 40

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468

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cager CAGEr

3.8 years ago Zhong JW • 0

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721

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cager

3.8 years ago Pengcheng Yang ▴ 50

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1.3k

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cager

3.8 years ago Pengcheng Yang ▴ 50

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645

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cager

3.8 years ago Pengcheng Yang ▴ 50

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451

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cager

4.2 years ago Jingwen ▴ 10

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772

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BRAIN CAGEr BRAIN CAGEr

updated 4.3 years ago by Charles Plessy ▴ 170 • written 8.0 years ago by Tobias Hohenauer ▴ 10

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626

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CAGEr

updated 4.8 years ago by Charles Plessy ▴ 170 • written 4.8 years ago by bo_yan ▴ 10

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1.3k

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CAGEr BAM software error R biostrings

updated 5.0 years ago by Charles Plessy ▴ 170 • written 5.1 years ago by orzechowska.mag ▴ 10

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1.4k

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CAGEr cage

updated 11 months ago by jingxian.18 • 0 • written 6.5 years ago by Vivek.b ▴ 100

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779

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CAGEr

updated 7.5 years ago by James W. MacDonald 60k • written 7.5 years ago by calibula2000 • 0

20 results • Page 1 of 1

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Comment: unable to install.packages("spatialLIBD") by Leonardo Collado Torres ▴ 1000

All the solutions Lori proposed are valid. The `STexampleData` package I think has only 1 of our samples (see https://bioconductor.org/pack…

Answer: how to use Rsamtools to parse extra fields from STAR alignment by Martin Morgan 25k

The 'extra columns' are called 'tags' in the SAM specification. Following the documentation `?ScanBamParam` you should add `tag = "NH"`. Se…

Comment: DEXSeq: Error in reading counts from htseq "Error in FUN(X[[i]], ...) : subscrip by Delta._.43 ▴ 10

Yes, indeed it is the same error. Here are the first few lines of my count file. ``` "ENSG00000000003":"001" 0 "ENSG00000000003":"002" 1032…

Comment: DEXSeq: Error in reading counts from htseq "Error in FUN(X[[i]], ...) : subscrip by Alejandro Reyes ★ 1.8k

Thanks for your detail post. I think this might be related to this issue here: https://support.bioconductor.org/p/9143537/ Just to verify…

Answer: spot- vs cell-level data access by Leonardo Collado Torres ▴ 1000

Hi, The `SingleCellExperiment` object you can download with `fetch_data(type = "sce")` pre-dates the creation of `SpatialExperiment`. No…

Votes

Answer: spot- vs cell-level data access

Answer: unable to install.packages("spatialLIBD")

Comment: unable to install.packages("spatialLIBD")

error running UniProt.ws

Answer: DEXSeq errors "Error in scan( line ... did not have 3 elements" and "Error in FU

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Scholar to voogd.o ▴ 10