Bioconductor CAGEr

Showing : CAGEr • reset

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1.2k

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CAGEr

updated 9 months ago by Charles Plessy ▴ 180 • written 17 months ago by Meng ▴ 30

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956

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CAGEr

updated 2.5 years ago by Charles Plessy ▴ 180 • written 2.7 years ago by Sergio • 0

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825

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CAGEr

updated 2.5 years ago by Charles Plessy ▴ 180 • written 3.0 years ago by MatteoP ▴ 10

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468

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CAGEr

3.0 years ago MatteoP ▴ 10

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1.1k

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CAGEr

updated 2.6 years ago by Charles • 0 • written 3.6 years ago by leehami7407 • 0

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819

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CAGEr quantilePositions

3.9 years ago mirkocelii ▴ 40

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1.2k

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cager cage ctss

updated 4.0 years ago by Charles Plessy ▴ 180 • written 4.8 years ago by sarac ▴ 20

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844

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CAGEr CAGEset quantile CAGEexp

4.0 years ago mirkocelii ▴ 40

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1.1k

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CAGEr IRanges aggregateTagClusters

4.0 years ago mirkocelii ▴ 40

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1.3k

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CTSS clustering tag per million tag counts CAGEr

updated 2.4 years ago by Charles Plessy ▴ 180 • written 4.9 years ago by regcastillo1990 • 0

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903

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TSS promoter cage cager

5.4 years ago bharata1803 ▴ 60

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901

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cager CAGEr

5.5 years ago Zhong JW • 0

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1.3k

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cager

5.5 years ago Pengcheng Yang ▴ 60

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2.3k

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cager

5.5 years ago Pengcheng Yang ▴ 60

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1.2k

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cager

5.6 years ago • updated 5.5 years ago Pengcheng Yang ▴ 60

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873

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cager

5.9 years ago Jingwen ▴ 10

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1.1k

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BRAIN CAGEr BRAIN CAGEr

updated 6.0 years ago by Charles Plessy ▴ 180 • written 9.7 years ago by Tobias Hohenauer ▴ 10

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993

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CAGEr

updated 6.5 years ago by Charles Plessy ▴ 180 • written 6.5 years ago by bo_yan ▴ 10

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2.0k

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CAGEr BAM software error R biostrings

updated 6.7 years ago by Charles Plessy ▴ 180 • written 6.8 years ago by orzechowska.mag ▴ 10

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2.1k

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CAGEr cage

updated 2.6 years ago by jingxian.18 • 0 • written 8.2 years ago by Vivek.b ▴ 100

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1.1k

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CAGEr

updated 9.2 years ago by James W. MacDonald 65k • written 9.2 years ago by calibula2000 • 0

21 results • Page 1 of 1

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Answer: Dominance Index for Shotgun Metagenomics Data by Leo Lahti ▴ 30

1. Note that Simpson's dominance index (\lambda) is a different index than inverse Simpson (1/\lambda) or reciprocal Simpson (1-\lambda). T…

Comment: Math expression in shapeCustom legend in EnhancedVolcano by pl23 • 0

Thank you very much - that worked perfectly! Word of warning to those who try this: it screws up the other legends because of the markdown …

Answer: PCA plot suggestions by Michael Love 41k

For help with interpretation and design of analysis, I recommend working with a local statistician. Due to time restrictions, I can only…

Comment: DESeq2 Error in `.rowNamesDF<-`(x, value = value): Invalid 'row.names' length by ussarizona ▴ 10

Hi Michael, Yes, I could figure it out what does the error mean. In my matrix I had the first colum GeneID while in my condition I only h…

Answer: Deseq2. decontXcounts not integers. Useful alternative? by Michael Love 41k

Another option would be to put the per sample estimated contamination in the design. This is for example how RUV etc help remove spurious D…

Votes

Answer: Math expression in shapeCustom legend in EnhancedVolcano

Comment: DESeq2 Error in `.rowNamesDF<-`(x, value = value): Invalid 'row.names' length

Comment: Deseq2. decontXcounts not integers. Useful alternative?

Comment: Opposite sign of LFC in count plots of DEGs (DESeq2)

biomaRt error: database disk image is malformed

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