Showing : CAGEr • reset
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54
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CAGEr consensusClustersDESeq2()
CAGEr
5 weeks ago MatteoP • 0
0
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0
replies
51
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CAGEexp vs CAGErseq
CAGEr
5 weeks ago MatteoP • 0
0
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4
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147
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CAGEr promoter width graph
CAGEr
7 months ago leehami7407 • 0
1
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4
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126
views
CAGEr quantilePositions() takes forever to run
CAGEr quantilePositions
12 months ago mirkocelii ▴ 40
1
vote
6
replies
370
views
Behaviour of getCTSS on a CAGEset - extra reads?
cager cage ctss
updated 12 months ago by ▴ 130 • written 22 months ago by ▴ 20
1
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3
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118
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CAGEr: Quantile Values (q_0.1 and q_0.9) in CAGEset / CAGEexp objects
CAGEr CAGEset quantile CAGEexp
12 months ago mirkocelii ▴ 40
4
votes
6
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161
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CAGEr - Error with aggregateTagClusters() - invalid class IRanges object: width(x) cannot contain negative integers
CAGEr IRanges aggregateTagClusters
12 months ago mirkocelii ▴ 40
2
votes
4
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323
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Does `clusterCTSS` and `aggregateTagClusters` sum raw-tag counts (and tpm) of the clustered tags into the resultant cluster?
CTSS clustering tag per million tag counts CAGEr
23 months ago regcastillo1990 • 0
0
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0
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238
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CAGEr get TSS in bed file
TSS promoter cage cager
2.5 years ago bharata1803 ▴ 40
0
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1
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289
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a problem from import CTSStable in CAGEr
cager CAGEr
2.5 years ago Zhong JW • 0
0
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2
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421
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error: getCTSS from CAGEexp class with removeFirstG=TRUE
cager
2.6 years ago Pengcheng Yang ▴ 50
9
votes
18
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794
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bam2CTSS function error from CAGEr package
cager
2.6 years ago Pengcheng Yang ▴ 50
4
votes
5
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352
views
no import.bam function in CAGEr version 1.22.3
cager
2.6 years ago Pengcheng Yang ▴ 50
1
vote
1
reply
274
views
CAGEr: consensusCluster doesn't have dominant CTSS info
cager
3.0 years ago Jingwen ▴ 10
0
votes
1
reply
585
views
CAGEr - How to change plot axis range in CAGEr
BRAIN CAGEr BRAIN CAGEr
updated 3.0 years ago by ▴ 130 • written 6.8 years ago by ▴ 10
1
vote
1
reply
461
views
clusterCTSS() error when running CAGEr
CAGEr
updated 3.6 years ago by ▴ 130 • written 3.6 years ago by ▴ 10
2
votes
8
replies
810
views
CAGEr BAM files size issue
CAGEr BAM software error R biostrings
updated 3.8 years ago by ▴ 130 • written 3.8 years ago by ▴ 10
4
votes
4
replies
1000
views
CAGEr : problem while filtering the bamFile
CAGEr cage
updated 3 months ago by • 0 • written 5.2 years ago by ▴ 100
0
votes
1
reply
667
views
Scale Y-axis in "plotInterquantileWidth" function for an easier comparison between conditions
CAGEr
updated 6.3 years ago by 56k • written 6.3 years ago by • 0
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Comment: Warning in EnhancedVolcano plot by Kevin Blighe 2.9k
Thanks - that is interesting to know.
Comment: Warning in EnhancedVolcano plot by charles.feigin ▴ 20
Sorry, one more quick reply. So, changing lengthConnectors and/or directionConnectors doesn't let me render any more connectors, but I foun…
Comment: Warning in EnhancedVolcano plot by charles.feigin ▴ 20
Ok I understand. I'll play around with these. Thank you!
Answer: How to make OrgPackage (BSgenome data) package available for R Bioconductor user by Hervé Pagès 14k
What organisms are they?
Comment: "dim<-" against on-disk arrays by Hervé Pagès 14k
I will look into this although I don't promise anything. Even though many of the operations supported by standard arrays can be implemented…
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Comment: Warning in EnhancedVolcano plot
Comment: Warning in EnhancedVolcano plot
Comment: Warning in EnhancedVolcano plot
Comment: Warning in EnhancedVolcano plot
A: How to make a (limma) heatmap displaying gene ID's as rownames
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