written 18.2 years ago by
A.J. Rossini
▴
810
0
votes
1
reply
722
views
0
votes
1
reply
8.8k
views
updated 10 weeks ago by
lekicoj188
•
0
•
written 8.5 years ago by
Cheng, Yong-Sheng
▴
10
1
vote
0
replies
90
views
0
votes
0
replies
301
views
12 months ago • updated 8 months ago
Gordon Smyth
45k
0
votes
1
reply
190
views
updated 6 months ago by
Basti
▴
280
•
written 6 months ago by
aikaterinilama
•
0
Recent ...
Replies
Comment: performing the differential binding in ChIP-seq
by
Bogdan
▴
640
I am asking the question because we have two sets of ChIP-seq data for a histone mark (lets' say H3K4me1) that were generated with :
<> an…
Comment: performing the differential binding in ChIP-seq
by
Bogdan
▴
640
Thank you. Yes, DiffBind might be a good choice shall we have replicates per sample.
Another choice is MA-norm2. Any other well-tested sug…
Comment: Error using read.ilmn and neqc
by
Gordon Smyth
45k
I edited the title of your question to be more specific.
Answer: Using limma to read Illumina HT-12 v4 data
by
Gordon Smyth
45k
It seems clear that you haven't exported the correct intensity data from GenomeStudio, and I think you recognize that yourself in your ques…
Answer: performing the differential binding in ChIP-seq
by
etiennedanis
•
0
DiffBind
https://bioconductor.org/packages/release/bioc/html/DiffBind.html
Votes
Awards
• All
Popular Question to
andrebolerbarros
▴
10
Scholar to
James W. MacDonald
59k
Scholar to
Guido Hooiveld
★
3.2k
Scholar to
Kevin Blighe
3.5k
Locations
• All
WEHI, Melbourne, Australia, just now
Palo Alto, CA, USA, 1 hour ago
United States, 1 hour ago
San Diego, 1 hour ago
Russia, 3 hours ago
WEHI, Melbourne, Australia, just now
Palo Alto, CA, USA, 1 hour ago
United States, 1 hour ago
San Diego, 1 hour ago
Russia, 3 hours ago
Traffic: 263 users visited in the last hour
Use of this site constitutes acceptance of our User Agreement and Privacy Policy.
Powered by the
version 2.3.6
version 2.3.6