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cellmix
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Extracting results from a DSA fit to expression data with only a gene markers list
cellmix
6.5 years ago
nrubinstein
• 0
3
votes
3
replies
1.8k
views
Error running CellMix SampleAnalysis vignette
software error
cellmix
vignette
expressionset
7.3 years ago
gabor.halasz
• 0
1
vote
1
reply
1.9k
views
CellMix compare results to CellCODE
cellmix
cellcode
updated 8.0 years ago by
Steve Lianoglou
★ 13k • written 8.0 years ago by
christopher.clarskon15
▴ 20
0
votes
0
replies
855
views
Coefmap plot without the sorting
coefmap
cellmix
8.3 years ago
thrabe
• 0
0
votes
0
replies
970
views
basismarkermap scaling fails for large data
Cellmix
8.3 years ago
thrabe
• 0
0
votes
1
reply
863
views
Access MarkerList attribute
cellmix
8.3 years ago
thrabe
• 0
0
votes
0
replies
1.6k
views
CellMix - Custom matrix with Abbas signature
deconvolution
cellmix
8.9 years ago
carleshf
▴ 10
7 results • Page
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Answer: Dominance Index for Shotgun Metagenomics Data
by
Leo Lahti
▴ 40
1. Note that Simpson's dominance index (\lambda) is a different index than inverse Simpson (1/\lambda) or reciprocal Simpson (1-\lambda). T…
Comment: Math expression in shapeCustom legend in EnhancedVolcano
by
pl23
• 0
Thank you very much - that worked perfectly! Word of warning to those who try this: it screws up the other legends because of the markdown …
Answer: PCA plot suggestions
by
Michael Love
41k
For help with interpretation and design of analysis, I recommend working with a local statistician. Due to time restrictions, I can only…
Comment: DESeq2 Error in `.rowNamesDF<-`(x, value = value): Invalid 'row.names' length
by
ussarizona
▴ 10
Hi Michael, Yes, I could figure it out what does the error mean. In my matrix I had the first colum GeneID while in my condition I only h…
Answer: Deseq2. decontXcounts not integers. Useful alternative?
by
Michael Love
41k
Another option would be to put the per sample estimated contamination in the design. This is for example how RUV etc help remove spurious D…
Votes
Answer: Dominance Index for Shotgun Metagenomics Data
Answer: Math expression in shapeCustom legend in EnhancedVolcano
Comment: DESeq2 Error in `.rowNamesDF<-`(x, value = value): Invalid 'row.names' length
Comment: Deseq2. decontXcounts not integers. Useful alternative?
Comment: Opposite sign of LFC in count plots of DEGs (DESeq2)
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James W. MacDonald
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Michael Love
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