Biostar Vignette

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SummarizedExperiment vignette

5 months ago BioInfoBeginnerrr • 0

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5.6 years ago gabor.halasz • 0

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ggbio autoplot color vignette

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github vignette test developers

updated 6.6 years ago by Dan Tenenbaum ★ 8.2k • written 6.6 years ago by anthonycolombo60 • 0

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vignette

updated 7.0 years ago by Dan Tenenbaum ★ 8.2k • written 7.0 years ago by K ▴ 50

10 results • Page 1 of 1

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Answer: spot- vs cell-level data access by Leonardo Collado Torres ▴ 980

Hi, The `SingleCellExperiment` object you can download with `fetch_data(type = "sce")` pre-dates the creation of `SpatialExperiment`. No…

Answer: unable to install.packages("spatialLIBD") by Leonardo Collado Torres ▴ 980

Hi @kstern, Thank you for your interest in `spatialLIBD`. You will still need the package in order to re-cast the object into a `Spatia…

Comment: Question regarding averaging DESeq2 results. by e.v.egeland • 0

Thanks for your quick reply, Wolfgang. Your answer does cover the essence of my question. I did initially apply both approaches discussed …

Comment: unable to install.packages("spatialLIBD") by shepherl 3.2k

I guess it depends on what you mean by only getting the datasets? You can clone the package with `git clone https://git.bioconductor.org/p…

Comment: Which is the best type of data for correlation or survival analysis by Yang Shi • 0

Thanks for your reply and your excellent package! Could you please tell me the **difference bwtween vst transformed data and the "vtd" base…

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C: No genes found in universe : goana error

A: No genes found in universe : goana error

No genes found in universe : goana error

Answer: Pathview unable to download pathways

Comment: Which is the best type of data for correlation or survival analysis

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