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Excluding samples as referenced in SummarizedExperiment vignette
SummarizedExperiment
vignette
4.0 years ago
BioInfoBeginnerrr
• 0
4
votes
5
replies
3.2k
views
Error in the vignette for biomaRt (when accessing an ensembl archive)
biomaRt
vignette
updated 4.9 years ago by
ashleymaeconard
▴ 10 • written 6.3 years ago by
Russ Hyde
▴ 10
2
votes
2
replies
1.6k
views
How to write the installation section in the vignette of a package that has not been sent into Bioconductor yet
newpackage
vignette
installation
updated 6.4 years ago by
shepherl
4.3k • written 6.4 years ago by
Krutik Patel
▴ 10
0
votes
1
reply
1.3k
views
Error executing flowcore vignette
flowcore
vignette
software error
updated 8.4 years ago by
Jiang, Mike
★ 1.3k • written 8.4 years ago by
Robert Baer
▴ 70
7
votes
2
replies
1.9k
views
Duplicated author affiliations in BiocStyle-based HTML document
biocstyle
vignette
updated 8.6 years ago by
Andrzej Oleś
▴ 750 • written 8.6 years ago by
Aaron Lun
★ 29k
0
votes
3
replies
3.2k
views
unable to connect to 'string.uzh.ch' on port 80
STRINGdb
vignette
updated 8.8 years ago by
Gregor Rot
▴ 10 • written 8.8 years ago by
mwinerip
• 0
3
votes
3
replies
2.4k
views
Error running CellMix SampleAnalysis vignette
software error
cellmix
vignette
expressionset
9.1 years ago
gabor.halasz
• 0
2
votes
3
replies
2.8k
views
No color support in ggbio for autoplot
ggbio
autoplot
color
vignette
updated 10.1 years ago by
aaron
▴ 10 • written 10.1 years ago by
timothypyork
• 0
1
vote
2
replies
2.2k
views
GitHub Continuous Integration, unit-tests, vignettes: R Packaging
github
vignette
test
developers
updated 10.2 years ago by
Dan Tenenbaum
★ 8.2k • written 10.2 years ago by
anthonycolombo60
• 0
3
votes
2
replies
2.0k
views
question regarding embedding images in vignette when creating bioconductor package
vignette
updated 10.6 years ago by
Dan Tenenbaum
★ 8.2k • written 10.6 years ago by
KB
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Answer: tximeta cannot open annotation gtf?
by
ATpoint
★ 5.0k
> Timeout of 60 seconds was reached You have to increase the default timeout limits for downloads, `options(timeout=3600)`. GENCODE serve…
Answer: GSEA error
by
James W. MacDonald
68k
At a very high level, the way non-model organisms are annotated is by using blast to find orthologs in other species that are well annotate…
Comment: Unable to find ENTREZ IDs
by
Adithi
• 0
Hi James, Thank you so much for your reply. My main goal is to find ortholog genes from chinese hamster gene symbols to mouse gene symbols…
Comment: Unable to find ENTREZ IDs
by
Adithi
• 0
Hi James, Thank you so much for your reply. My main goal is to find ortholog genes from chinese hamster gene symbols to mouse gene symbols…
Answer: Unable to find ENTREZ IDs
by
James W. MacDonald
68k
Those are the 'symbols', and are a concatenation of LOC and the NCBI Gene ID (what used to be called an Entrez Gene ID). As an example:http…
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Answer: GSEA error
Answer: OrgDb for maize
Comment: Highly similar RNA-seq samples in PCA - pooling or technical duplication?
Answer: Highly similar RNA-seq samples in PCA - pooling or technical duplication?
Answer: Highly similar RNA-seq samples in PCA - pooling or technical duplication?
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