Showing : expressionset • reset
0
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3
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1.3k
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[ExpressionSet] Question: Error in validObject(.Object)
ExpressionSet Assay NanoString Error Data
updated 14 months ago by 63k • written 14 months ago by • 0
3
votes
9
replies
1.1k
views
How many features an ExpressionSet can contain ?
ExpressionSet
15 months ago OE • 0
0
votes
1
reply
503
views
Calculations (averaging and normalization) with expressionset
RTCA Biobase Bioconductor expressionset
updated 2.8 years ago by 63k • written 2.8 years ago by • 0
5
votes
2
replies
654
views
Is the ExpressionSet Class Deprecated?
expressionset
updated 3.1 years ago by 25k • written 3.1 years ago by ▴ 20
4
votes
8
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1.8k
views
Help! ExpressionSet function from Biobase not working! (issue with data structure??)
limma biobase ExpressionSet
updated 3.4 years ago by 48k • written 3.4 years ago by • 0
0
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1
reply
354
views
ExpressionSet: any shortcut for number-of-samples and number-of-features?
expressionSet
3.4 years ago aush ▴ 40
2
votes
2
replies
1.8k
views
Error object and replacement value dimnames differ, when changing column names of assayData of ExpressionSet (although dimension is same)
oligo GEOquery ExpressionSet
updated 3.9 years ago by 63k • written 3.9 years ago by ▴ 20
0
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2
replies
800
views
'GO_analyse' function error
goexpress ExpressionSet GO_analyse
4.1 years ago rezashiralmohammad • 0
0
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0
replies
637
views
Computing se.exprs in R for an Expressionset?
microarray Expressionset se.exprs
5.1 years ago payam_delfani1980 • 0
5
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7
replies
1.2k
views
Difficulty extending ExpressionSet
biobase expressionset eset
updated 5.2 years ago by 25k • written 5.2 years ago by ▴ 20
0
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0
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673
views
HTqPCR - unable to create a 'qPCRset' object
htqpcr expressionset
5.2 years ago jirkanov • 0
0
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0
replies
780
views
Error in building expression set for ArrayExpress
microarray expressionset arrayexpress bioconductor r
5.5 years ago rf • 0
1
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10
replies
1.4k
views
Error when restore rownames of Feature data of ExpressionSet
expressionset
updated 6.0 years ago by 25k • written 6.0 years ago by • 0
4
votes
3
replies
1.0k
views
How to set custom Brainarray annotation for Biobase ExpressionSet object?
affymetrix microarrays expressionset biobase annotation brainarray
updated 6.2 years ago by 63k • written 6.2 years ago by • 0
0
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6
replies
1.3k
views
expression correlation on an ExpressionSet
ExpressionSet caseControl Correlation Plot
updated 6.4 years ago by • 0 • written 6.6 years ago by ▴ 10
0
votes
1
reply
940
views
Problem Subsetting ExpressionSet
expressionset biobase bioconductor
updated 6.4 years ago by 63k • written 6.4 years ago by ▴ 60
0
votes
1
reply
1.1k
views
single probe represent multiple genes?
gcrma microarray expressionset
updated 6.6 years ago by ▴ 810 • written 6.6 years ago by ▴ 20
0
votes
1
reply
1.2k
views
InSilicoMerging error when using merge
insilicomerging error insilicodb expressionset
6.6 years ago andreas.pittroff • 0
3
votes
3
replies
1.6k
views
Error running CellMix SampleAnalysis vignette
software error cellmix vignette expressionset
6.7 years ago gabor.halasz • 0
0
votes
1
reply
748
views
beadarray error conversion
beadarray limma ExpressionSet
updated 6.8 years ago by 48k • written 6.8 years ago by • 0
1
vote
2
replies
2.6k
views
how to update feature data with different dimensions in expressionSet?
biobase eSet expressionSet
updated 6.9 years ago by 25k • written 6.9 years ago by ★ 3.7k
1
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3
replies
1.9k
views
Log-Transform Values of eSet
expressionset bioconductor limma geoquery
updated 6.9 years ago by ▴ 810 • written 6.9 years ago by • 0
3
votes
5
replies
1.3k
views
Get Gen-Expression values accross samples for ONE Gene given by Gene-Symbol
expressionset bioconductor
updated 7.0 years ago by ▴ 70 • written 7.0 years ago by • 0
0
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0
replies
1.1k
views
Export expressionSet to ArrayExpress "processed data"
expressionset simpleaffy arrayexpress tsv
7.1 years ago Steffen Neumann ▴ 30
1
vote
1
reply
884
views
Generating ExpressionSet Objects
r expressionset subseq rnaseq
updated 7.2 years ago by 25k • written 7.2 years ago by ▴ 70
0
votes
1
reply
833
views
ExpressionSet: Internal Standard
expressionset
updated 7.3 years ago by 13k • written 7.3 years ago by • 0
0
votes
3
replies
2.2k
views
Annotation in ExpressionSet object
ExpressionSet globaltest
7.3 years ago NS ▴ 60
1
vote
1
reply
886
views
Combining more than 2 ExpressionSets at the same time,
expressionset combine concatenate combineTwoExpressionSet
7.4 years ago g_draculla ▴ 10
1
vote
2
replies
1.2k
views
How can I see that my samples is normalized or not?
Normalization ExpressionSet Series
updated 7.6 years ago by 63k • written 7.6 years ago by • 0
2
votes
4
replies
1.7k
views
Weird error after trying to subset an microarray expression set with gene symbols from topTable function from limma
expressionset limma annotation affymetrix microarrays
updated 7.6 years ago by 25k • written 7.6 years ago by ▴ 810
2
votes
5
replies
3.3k
views
GSVA error - incomplete instalation?
GSVA ExpressionSet
7.9 years ago • updated 7.8 years ago thrabe • 0
6
votes
7
replies
3.3k
views
GOexpress: use DESeq2 data object as input
GOexpress deseq2 expressionset
7.9 years ago martin.hoelzer ▴ 20
2
votes
1
reply
2.8k
views
ExpressionSet: Remove NA values above a certain threshold
expressionset
updated 8.1 years ago by ★ 28k • written 8.1 years ago by ▴ 30
3
votes
10
replies
2.0k
views
Question about converting rownames of an expression dataset to their corresponding gene symbols
filtering bioconductor genesymbols expressionset
8.5 years ago svlachavas ▴ 810
34 results • Page 1 of 1
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Replies
Comment: DelayedArray::read_sparse_block by Hervé Pagès 16k
No. But I will need to modify the `write_block()` method for TENxRealizationSink implemented in **HDF5Array** to make it handle blocks that…
Answer: ''Model_Matrix'' error by Gordon Smyth 48k
This is actually an error message from base R rather than from limma. The error says that `Group` contains 0 or 1 levels, so your assumptio…
Comment: Speeding up of DelayedArray::write_block() by Hervé Pagès 16k
> I don't know the details but do you mean using HDF5RealizationSink or TENxRealizationSink will make it possible to writing sparse multi-d…
Comment: DMRcate design by Jitendra ▴ 10
Thanks James, do I also need to mention 'contrasts=FALSE' in cpg.annotate.And also what to mentions in analysis.type="differential",/ "ANO…
Comment: Speeding up of DelayedArray::write_block() by Koki ▴ 10
I don't know the details but do you mean using `HDF5RealizationSink` or `TENxRealizationSink` will make it possible to writing sparse multi…
Votes
Steps needed to change design (relevel factors) in DESeq2
Steps needed to change design (relevel factors) in DESeq2
Answer: DMRcate design
Answer: DMRcate design
Comment: DMRcate design
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