Showing : cghmcr • reset
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Error run cghMCR function in cghMCR package
cghmcr
8.2 years ago ljia1180 • 0
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1
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1.4k
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SGOL plot
cghMCR cghMCR
updated 10.6 years ago by • 0 • written 14.2 years ago by ▴ 580
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2
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1.5k
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questions on cghMCR package
DNAcopy cghMCR DNAcopy cghMCR
updated 14.0 years ago by 25k • written 14.0 years ago by ▴ 280
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1.3k
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Fwd: seeking help on cghMCR pleeeease
DNAcopy cghMCR DNAcopy cghMCR
14.1 years ago nac ▴ 280
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1.2k
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seeking help on cghMCR pleeeease
DNAcopy cghMCR DNAcopy cghMCR
14.1 years ago nac ▴ 280
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1.3k
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Help on cghMCR units of gapAllowed
DNAcopy cghMCR DNAcopy cghMCR
14.1 years ago nac ▴ 280
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1.6k
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cghMCR package:Is it possible to find MCR by not usingDNAcopy object?
PROcess DNAcopy cghMCR PROcess DNAcopy cghMCR
14.3 years ago viritha kaza ▴ 580
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1
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1.7k
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cghMCR package:Is it possible to find MCR by not using DNAcopy object?
DNAcopy cghMCR DNAcopy cghMCR
updated 14.3 years ago by ▴ 20 • written 14.3 years ago by ▴ 580
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1.1k
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problem with readPositionalInfo() for Nimblegen for ArrayCGH
snapCGH cghMCR snapCGH cghMCR
14.5 years ago Muksitul Haque ▴ 10
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1.1k
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vector size issue in CGHMCR
cghMCR cghMCR
updated 14.8 years ago by 21k • written 14.8 years ago by ▴ 280
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1.4k
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cghMCR package - Jianhua Zhang
DNAcopy cghMCR DNAcopy cghMCR
16.0 years ago Luz G Alonso ▴ 20
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1.2k
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Converting Seglist to segments file
Cancer convert DNAcopy snapCGH cghMCR Cancer convert DNAcopy snapCGH cghMCR
18.5 years ago Daniel Brewer ★ 1.9k
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1.2k
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cghMCR bug?
Cancer DNAcopy cghMCR Cancer DNAcopy cghMCR
updated 19.0 years ago by ★ 2.9k • written 19.0 years ago by ★ 1.1k
13 results • Page 1 of 1
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Answer: When to use edgeR or limma by Gordon Smyth 53k
The short answer is that we generally prefer edgeR for applications with lots of small counts and limma for complex designs with random eff…
Comment: limpa-blank normalization and Spectronaut's PTM stoichiometry by Gordon Smyth 53k
I updated the above answer today.
Answer: When to use edgeR or limma by James W. MacDonald 68k
I would use edgeR's quasi-likelihood model for any analysis with a smaller number of observations (like 3 vs 3 or similar), but if you have…
Answer: limpa-blank normalization and Spectronaut's PTM stoichiometry by Gordon Smyth 53k
The short answer is that limpa reads standard feature-level intensities from Spectronaut or other quantifications tools. limpa is designed …
Comment: Question about the filterByExpr function inputs in edgeR by mohammedtoufiq91 ▴ 10
@gordonsmyth Noted, thank you very much.
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Answer: When to use edgeR or limma
Answer: When to use edgeR or limma
Answer: When to use edgeR or limma
A: deseq2 - paired samples in 2 sequencing types with very different library sizes
Comment: Question about the filterByExpr function inputs in edgeR
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