updated 2.9 years ago by
shepherl
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written 3.0 years ago by
Tim Triche
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Comment: DESeq2 output explanation
by
krushnach80
•
0
In plain English ,I have a comparison HSC and LSC where HSC is my control , Im comparing HSC vs LSC , so if the fold change is positive it …
Comment: Swish direction of comparison based on order of factors
by
Jean
•
0
Thank you that helps a lot!
Answer: Format roxgen comment (alternative to formatR)
by
Mike Smith
★
5.1k
In my opinion anything tagged as a "NOTE" in the output if BiocCheck is advisory. The package review process is a discussion and, while I …
Comment: deseq2 machine sizing best practices for very large data set
by
ATpoint
▴
840
https://support.bioconductor.org/p/60432/#60456
If you ask me the memory is the only factor here, with limma-voom things are single-thread…
Comment: Combining two groups in contrast deseq2
by
Bine
▴
20
Thank you I looked at ?results:
## Example 1: two-group comparison
dds <- makeExampleDESeqDataSet(m=4)
dds <- DESeq(…
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