Biostar Package development

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362

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cran package development dependencies

updated 2.7 years ago by Peter Langfelder ★ 2.6k • written 2.7 years ago by bjgrant • 0

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463

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developers bioc-devel package development circular dependencies

updated 2.8 years ago by shepherl 2.8k • written 2.8 years ago by Tim Triche ★ 4.2k

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428

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package development r package problem build/check error mmappr2

2.8 years ago Kyle Johnsen ▴ 20

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704

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package development

updated 2.9 years ago by Martin Morgan 25k • written 2.9 years ago by ntueeb05howard • 0

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687

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package development size limit external data

updated 3.3 years ago by Aaron Lun ★ 27k • written 3.3 years ago by YaGalbi ▴ 20

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814

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tissue specificity r package package development

updated 3.4 years ago by jaro.slamecka ▴ 130 • written 3.4 years ago by YaGalbi ▴ 20

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1.6k

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package development bioconductor rstudio rmarkdown vignettes

3.7 years ago clarisbaby • 0

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1.5k

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bioconductor package development R roxygen2 warning

3.7 years ago clarisbaby • 0

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569

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bioccheck package development

3.7 years ago Paul Brennan ▴ 10

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1.2k

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bioccheck roxygen2 warning bioc-devel package development

updated 3.7 years ago by Lluís Revilla Sancho ▴ 650 • written 3.7 years ago by Paul Brennan ▴ 10

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826

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github package updates developers package development

3.8 years ago rtraborn • 0

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1.2k

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subversion bioc-devel package development usedevel Tutorial

4.0 years ago Bohdan Khomtchouk ▴ 10

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587

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job position next-generation sequencing package development Job

4.0 years ago Thomas Girke ★ 1.7k

13 results • Page 1 of 1

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Comment: DESeq2 question: why I got discrepancy results for DEGs when using different way by Michael Love 33k

What is the correlation of the LFC for your two contrasts of mut vs wt in auto ganglia? Does the scatterplot of log2 fold changes look like…

Comment: DESeq2 question: why I got discrepancy results for DEGs when using different way by Ming ▴ 350

Thx for the advice about the reference levels, in which I did do as you suggested! In fact, I even tried more options just want to see why…

Answer: Time series DE gene analysis with edgeR where specific timepoints have NA levels by Gordon Smyth 43k

> is there a way to incorporate also the information of the additional samples that lack any of the aforementioned levels? NA values are n…

Comment: Time series DE gene analysis with edgeR where specific timepoints have NA levels by James W. MacDonald 57k

The `voomLmFit` function will automatically fit a linear mixed model accounting for within-subject correlations if you block on patient, so…

Comment: error in getBM (biomaRt): "error: no such table: metadata" by Mike Smith ★ 5.0k

Thanks for providing this solution. Anyone else encountering the issue can test if the cache is a problem by running `getBM()` with the ar…

Votes

tximeta error in fetching genome info

Answer: error in getBM (biomaRt): "error: no such table: metadata"

C: DESeq2 design formula: single control for multiple conditions [RIP-seq]

DESeq2 testing ratio of ratios (RIP-Seq, CLIP-Seq, ribosomal profiling)

Answer: cannot install edgeR on M1 Mac

Awards • All

Scholar to James W. MacDonald 57k

Teacher to Guido Hooiveld ★ 3.0k

Scholar to Michael Love 33k