Bioconductor Cleanupdtseq

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cleanUpdTSeq BSgenome BSgenomeForge

updated 5.9 years ago by Julie Zhu ★ 4.3k • written 5.9 years ago by danielle.bilodeau • 0

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Normalization Clustering convert cleanUpdTSeq Normalization Clustering convert cleanUpdTSeq

11.3 years ago Julie Zhu ★ 4.3k

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Answer: DESeq2 Heatmap by James W. MacDonald 67k

Two things. First, `scale` is already vectorized, so you don't have to use `apply`. You can instead just do `t(scale(t(mat)))` . Second, th…

Answer: Improve performance of qusage aggregateGeneSet by James W. MacDonald 67k

This support site is meant mostly to help people with questions about using Bioconductor packages rather than posting code improvements. I …

Answer: promoters_txdb <- promoters(txdb, upstream = 2000) is not 2000 by James W. MacDonald 67k

If you use `promoters` and do not provide an argument for something that has a default, you will get the default argument. Your last call t…

Comment: org.Hs.eg.db issue by k.panov • 0

installed R on another PC, works perfectly. ergo, problem outside of R probably..... :-(

Comment: MBDseq analysis using qsea package by Lukas ▴ 20

Hi, I checked in with Matthias and here is his response: You need to indicate "samples": "The indices of the samples for which individu…

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A: Processing agilent data by limma

A: Linear regression in DESeq2

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