Showing : cosmo • reset
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cosmo vignette example error
cosmo cosmo
13.4 years ago Guest User ★ 13k
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using cosmo to find multiple DNA motifs
cosmo cosmo
13.8 years ago Paul Shannon ▴ 750
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1.2k
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Cosmo Background model
probe cosmo probe cosmo
15.9 years ago Prashantha Hebbar ▴ 260
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774
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Cosmo background model
probe cosmo probe cosmo
15.9 years ago Prashantha Hebbar ▴ 260
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Help on Cosmo back ground model
probe cosmo probe cosmo
15.9 years ago Prashantha Hebbar ▴ 260
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Help on Cosmo
probe cosmo probe cosmo
15.9 years ago Prashantha Hebbar Kiradi [MU-MLSC] ▴ 90
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cosmo: how to search for more than one possible TFBS
cosmo cosmo
16.6 years ago Thierry Janssens ▴ 40
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sequence search using a position weight matrix?
Biostrings cosmo Biostrings cosmo
updated 18.3 years ago by 16k • written 18.3 years ago by ★ 1.1k
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1.1k
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cosmo package - Tk requirement?
Visualization cosmo Visualization cosmo
updated 19.0 years ago by ▴ 30 • written 19.0 years ago by ▴ 10
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Answer: When to use edgeR or limma by Gordon Smyth 53k
The short answer is that we generally prefer edgeR for applications with lots of small counts and limma for complex designs with random eff…
Comment: limpa-blank normalization and Spectronaut's PTM stoichiometry by Gordon Smyth 53k
I updated the above answer today.
Answer: When to use edgeR or limma by James W. MacDonald 68k
I would use edgeR's quasi-likelihood model for any analysis with a smaller number of observations (like 3 vs 3 or similar), but if you have…
Answer: limpa-blank normalization and Spectronaut's PTM stoichiometry by Gordon Smyth 53k
The short answer is that limpa reads standard feature-level intensities from Spectronaut or other quantifications tools. limpa is designed …
Comment: Question about the filterByExpr function inputs in edgeR by mohammedtoufiq91 ▴ 10
@gordonsmyth Noted, thank you very much.
Votes
Answer: When to use edgeR or limma
Answer: When to use edgeR or limma
Answer: When to use edgeR or limma
A: deseq2 - paired samples in 2 sequencing types with very different library sizes
Comment: Question about the filterByExpr function inputs in edgeR
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