Showing : ctc • reset
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Errors w/ getBioC(develOK =TRUE) with R2.0 devel
aCGH GO Biobase DynDoc annotate edd genefilter geneplotter rhdf5 multtest ctc ROC affy
19.7 years ago Matthew Hannah ▴ 940
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Queries on the 4x44PreProcess Package
Normalization ctc limma Agi4x44PreProcess Normalization ctc limma Agi4x44PreProcess
15.2 years ago Pedro López Romero ▴ 360
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Updated ctc package available
ctc ctc
21.3 years ago Jeff Gentry ★ 3.9k
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Errors w/ getBioC()
aCGH GO Biobase DynDoc annotate edd genefilter geneplotter rhdf5 multtest ctc ROC affy
19.7 years ago Matthew Hannah ▴ 940
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problems with getBioC() and getBioC(develOK=TRUE) on R 2.0.0
aCGH GO Biobase DynDoc annotate edd genefilter geneplotter rhdf5 multtest ctc ROC affy
19.6 years ago Goeman, J.J. MSTAT ▴ 150
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problems with getBioC() and getBioC(develOK=TRUE) on R 2.0.0
aCGH GO Biobase DynDoc annotate edd genefilter geneplotter rhdf5 multtest ctc ROC affy
19.6 years ago rgentleman ★ 5.5k
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:Export 1 way cluster to treeview
Clustering ctc Clustering ctc
19.4 years ago Anthony Bosco ▴ 500
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Xcluster
Microarray ctc Microarray ctc
18.8 years ago Antoine Lucas ▴ 100
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Query regarding Clustering
Clustering ctc Clustering ctc
updated 14.0 years ago by ▴ 120 • written 14.0 years ago by 21k
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Finding coding SNPs with predictCoding
SNP ctc SNP ctc
updated 12.2 years ago by ★ 1.7k • written 12.2 years ago by ★ 6.8k
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Finding coding SNPs with predictCoding
SNP Annotation BSgenome ctc BSgenome cycle genomes SNP Annotation BSgenome ctc BSgenome
updated 12.1 years ago by ★ 1.7k • written 12.1 years ago by ★ 6.8k
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ctc::hc2Newick branch length errors?
ctc ctc
11.1 years ago Narayanan, Manikandan NIH/NIAID [E] ▴ 60
12 results • Page 1 of 1
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Answer: limma Intercept vs No-intercept models completely changing DMR results? by James W. MacDonald 65k
This part: ``` design_intercept <- model.matrix(~Alt+Sex+Age+PC1, data=targets_Sherpa) colnames(design_intercept) <- c("AltSHP_LA","Al…
Comment: CombineArrays for EPIC and EPIC V2 by Kim • 0
Thank you Tim, this is a great help in getting me started!
Comment: Too many significant genes when integrating gtex and tcga by Michael Love 41k
Yes, this was one of the aspects we highlighted in the 2014 paper, and it's also in the workflow. Check these places first. Also take a st…
Answer: Too many significant genes when integrating gtex and tcga by James W. MacDonald 65k
See `?results`, in particular the lfcThreshold argument.
Comment: Once again a "Model matrix not full rank" by James W. MacDonald 65k
You already ran a temporal assay. Now you can compare each time point to the baseline. The interaction term is only applicable if you have…
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Answer: CombineArrays for EPIC and EPIC V2
Answer: Too many significant genes when integrating gtex and tcga
Comment: Too many significant genes when integrating gtex and tcga
A: Print Differentially Expressed Exons From Dexseq Results
stuck on unimplemented type 'list' in 'EncodeElement'
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