Bioconductor Customannotation

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customAnnotation

updated 3.1 years ago by Gopal • 0 • written 3.4 years ago by coldi11 • 0

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customannotation enrichmentanalysis topGO

updated 4.2 years ago by James W. MacDonald 68k • written 4.2 years ago by Aini • 0

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Answer: Annotation package for Manduca sexta by shepherl 4.1k

Yes through the AnnotationHub ``` > library(AnnotationHub) > ah = AnnotationHub() snapshotDate(): 2024-10-28 > query(ah, "Manduc…

Comment: Ensembl site unresponsive via biomaRt by mdeea123 ▴ 10

Thanks for the link. I will contact them directly, I wish they had some sort of status page.

Comment: Ensembl site unresponsive via biomaRt by Mike Smith ★ 6.6k

I think this is an unrelated issue. The original post includes the message `Error: 'curl_parse_url' is not an exported object from 'namesp…

Comment: pairedGSEA input files by shdam ▴ 10

Hi Sara, Apologies for the slow response! James is exactly right. Both `salmon` and `kallisto` can produce transcript counts, if you map …

Comment: Unused arguments error without used arguments in GSVA? by michaelarringtony • 0

Perhaps from a direct call to gsva without the parameter [Sprunki Pyramixed][1] object [1]: https://pyramixed.io/

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clusterProfiler-GO enrichment Error

A: Machine learning in R book

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