Bioconductor Des

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427

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DESeq2 RUVSeq RUVseq BatchEffect DES

updated 23 days ago by James W. MacDonald 65k • written 24 days ago by Alexandre • 0

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152

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Des DESeq2

updated 5 weeks ago by hemantcnaik • 0 • written 5 weeks ago by Sahar • 0

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245

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DESeq2 DEs

9 weeks ago feather-W • 0

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523

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DESeq2 des

updated 17 months ago by Michael Love 42k • written 18 months ago by Devin • 0

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575

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DES DESIGN

updated 20 months ago by Michael Love 42k • written 20 months ago by mike • 0

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629

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DESeq2 DES

updated 3.4 years ago by Michael Love 42k • written 3.4 years ago by heikki.sarin ▴ 10

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Comment: all variables in design formula must be columns in colData (Deseq2) error by ATpoint ★ 4.1k

coldata_rat <- data.frame(conditions=..., batch=...)

Answer: Mac ARM64 build report for BioC 3.19 from 'kjohnson3' reporting ERROR which it by robersy • 0

Thank you all for your comments. I will follow your suggestions.

Comment: Numerical differences in DESeq2 output depending on different design matrix cons by Ken C • 0

Hi Michael, thanks a lot for your prompt reply! Not sure if this is appropriate or if you are the right person to ask -- is there anything…

Comment: Numerical differences in DESeq2 output depending on different design matrix cons by Ken C • 0

Well, if I look at genes with baseMean>50, then the relative absolute difference in log2FoldChange (say over the absolute log2FoldChange of…

Comment: all variables in design formula must be columns in colData (Deseq2) error by Galina • 0

Thank you for advice, you mean I need to add: countdata_rat <- data.frame(condition = as.factor(METADATA_RAT$treatment)) and total: dds_…

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Answer: Mac ARM64 build report for BioC 3.19 from 'kjohnson3' reporting ERROR which it

Comment: Mac ARM64 build report for BioC 3.19 from 'kjohnson3' reporting ERROR which it

Answer: Mac ARM64 build report for BioC 3.19 from 'kjohnson3' reporting ERROR which it

Comment: Mac ARM64 build report for BioC 3.19 from 'kjohnson3' reporting ERROR which it

Answer: Error while installing BiocManager::install("org.Vdahliae.eg.db")

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