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Comment: Bioconductor 3.22 Release Schedule
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loganlstevens
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This release reminds me of the strategies in [solitaired](https://solitaired.io) to overcome live solitaires.
Answer: Create consensusMatrix for codon bases
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Kevin Blighe
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To address your query on generating a codon frequency matrix analogous to the output from `consensusMatrix` for a `DNAStringSet` object, no…
Answer: Finding duplicated entries in GRangesList
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Kevin Blighe
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The duplicated and unique functions operate element-wise on GRangesList objects. This means that they apply the respective function to each…
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Kevin Blighe
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Your interpretation of the column headers in the SigDF object is correct: MG corresponds to the methylated signal intensity in the green ch…
Answer: DESeq2 on non-RNASeq counts data
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Kevin Blighe
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The use of DESeq2 for count data from artificial sequences is acceptable, as the program models counts via a negative binomial distribution…
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