Showing : diagnostic plot • reset
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Evaluation of diagnostic plot resulted from ComBat function regarding batch effect correction of a merged microarray dataset
ComBat diagnostic plot batch effect affymetrix microarrays sva
updated 8.8 years ago by ▴ 870 • written 8.8 years ago by ▴ 840
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Comment: Epic v2 Annotation CpG_maf source? by Meghan • 0
Thank you, so much, for this reply!
Comment: txdb.mmusculus.ucsc.mm10.knowngene issue on X chromosome by remi-xavier.coux ▴ 10
That indeed worked, thanks a lot for the help (and for karyoploteR)
Comment: conumee with Infinium MethylationEPIC v2.0 by fraober • 0
i also have the same issue, if anyone managed to find a solution it would be great if you could share it! (EPICv2 samples + conumee2 (not c…
Comment: Conumee with EPICv2 Segment function by fraober • 0
i also have the same issue, if anyone managed to find a solution it would be great if you could share it! (EPICv2 samples + conumee2 (not c…
Comment: txdb.mmusculus.ucsc.mm10.knowngene issue on X chromosome by bernatgel ▴ 150
James is right, it is using "hg19" if no genome is specified. The other regions probably worked because they are also correct on the human …
Votes
Comment: txdb.mmusculus.ucsc.mm10.knowngene issue on X chromosome
Answer: Epic v2 Annotation CpG_maf source?
Answer: bioconductor packages on bioconda
Filtering low variance genes for WGCNA
A: Filtering low variance genes for WGCNA
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