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distance
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0
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357
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Distance between columns vs distance between rows and SVD
distance
svd
15 months ago
Lenny186
• 0
0
votes
0
replies
544
views
Hopach: distancematrix and distancevector do not return identical results
documentation
bug
hopach
euclidean
distance
2.2 years ago
txema.heredia
• 0
0
votes
1
reply
1.2k
views
Consensus Cluster Plus pre-computed distance matrix
consensusclusterplus
distance
clustering
updated 5.1 years ago by
chris86
▴ 420 • written 5.1 years ago by
neuro3030
• 0
1
vote
1
reply
904
views
Finding distance between end of all ORFs in utr and start of first cds exon in transcript coordinates
granges
distance
updated 6.5 years ago by
Michael Lawrence
★ 11k • written 6.5 years ago by
hauken_heyken
▴ 80
0
votes
0
replies
880
views
pairwise dist from bam file
bam
diversity
distance
pairwise
6.5 years ago
achaillon
• 0
5 results • Page
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Answer: Dominance Index for Shotgun Metagenomics Data
by
Leo Lahti
▴ 40
1. Note that Simpson's dominance index (\lambda) is a different index than inverse Simpson (1/\lambda) or reciprocal Simpson (1-\lambda). T…
Comment: Math expression in shapeCustom legend in EnhancedVolcano
by
pl23
• 0
Thank you very much - that worked perfectly! Word of warning to those who try this: it screws up the other legends because of the markdown …
Answer: PCA plot suggestions
by
Michael Love
41k
For help with interpretation and design of analysis, I recommend working with a local statistician. Due to time restrictions, I can only…
Comment: DESeq2 Error in `.rowNamesDF<-`(x, value = value): Invalid 'row.names' length
by
ussarizona
▴ 10
Hi Michael, Yes, I could figure it out what does the error mean. In my matrix I had the first colum GeneID while in my condition I only h…
Answer: Deseq2. decontXcounts not integers. Useful alternative?
by
Michael Love
41k
Another option would be to put the per sample estimated contamination in the design. This is for example how RUV etc help remove spurious D…
Votes
Answer: Dominance Index for Shotgun Metagenomics Data
Answer: Math expression in shapeCustom legend in EnhancedVolcano
Comment: DESeq2 Error in `.rowNamesDF<-`(x, value = value): Invalid 'row.names' length
Comment: Deseq2. decontXcounts not integers. Useful alternative?
Comment: Opposite sign of LFC in count plots of DEGs (DESeq2)
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