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hopach
•
reset
0
votes
0
replies
108
views
Hopach: distancematrix and distancevector do not return identical results
documentation
bug
hopach
euclidean
distance
3 months ago
txema.heredia
• 0
1
vote
5
replies
4.9k
views
HOPACH error: "negative length vectors are not allowed" in distancematrix(). Matrix too large?
hopach
updated 7.1 years ago by
kpollard
▴ 110 • written 7.1 years ago by
ejliaw
• 0
0
votes
3
replies
770
views
hopach generates a wrong output
hopach
7.4 years ago
Alogmail2@aol.com
▴ 90
0
votes
0
replies
1.2k
views
displaying clustering results in TreeView or MapleTree
Microarray
Clustering
Kidney
Ovarian
probe
hopach
Microarray
Clustering
Kidney
Ovarian
10.4 years ago
Mark Baumeister
▴ 40
0
votes
1
reply
866
views
CRAN packages maintained by you
hexbin
gpls
RBGL
impute
Icens
hopach
maanova
RLMM
CORREP
cycle
hexbin
gpls
RBGL
Icens
updated 10.5 years ago by
Nicholas Lewin-Koh
▴ 430 • written 10.5 years ago by
Kurt Hornik
▴ 10
0
votes
13
replies
1.3k
views
Bioconductor Digest, Vol 87, Issue 10
Clustering
hopach
Clustering
hopach
updated 12.0 years ago by
Richard Pearson
▴ 160 • written 12.0 years ago by
avinash gupta
▴ 130
0
votes
0
replies
667
views
Problem with Hopach: "Error in dmat[ord, ]"
drosophila2
hopach
drosophila2
hopach
12.6 years ago
Samuel GRANJEAUD - IR/ICIM
▴ 60
0
votes
0
replies
739
views
Problem with Hopach: "Error in dmat[ord, ]"
drosophila2
hopach
drosophila2
hopach
12.9 years ago
Paolo Innocenti
▴ 320
0
votes
2
replies
922
views
Problem with Hopach: "Error in dmat[ord, ]"
drosophila2
hopach
drosophila2
hopach
updated 13.0 years ago by
Vincent J. Carey, Jr.
6.6k • written 13.0 years ago by
Paolo Innocenti
▴ 320
0
votes
0
replies
559
views
Hopach cluster quality metrics
hopach
hopach
13.6 years ago
Khan, Anar
▴ 30
0
votes
0
replies
639
views
HOPACH and .cdt which doesn't work with javatreeview
Clustering
hopach
Clustering
hopach
13.7 years ago
Sébastien Tourlet
▴ 20
0
votes
1
reply
741
views
HOPACH clustering of genes
Clustering
hopach
Clustering
hopach
updated 13.8 years ago by
Shannon, William
▴ 20 • written 13.8 years ago by
Nathan Harmston
▴ 100
0
votes
0
replies
536
views
Why makeoutput() function is not included in hopach 1.4.3 version
Microarray
Clustering
hopach
Microarray
Clustering
hopach
14.0 years ago
Suprabhath Reddy
▴ 10
0
votes
1
reply
656
views
How to extract Hopach MSS value
Clustering
hopach
Clustering
hopach
updated 14.3 years ago by
Vincent J. Carey, Jr.
6.6k • written 14.3 years ago by
Prateek Singh
▴ 20
0
votes
1
reply
2.0k
views
ReadAffy can not find function read.AnnotatedDataFrame
Biobase
genefilter
affydata
limma
simpleaffy
hopach
affyio
Biobase
genefilter
affydata
updated 15.5 years ago by
James W. MacDonald
59k • written 15.5 years ago by
Georg Otto
▴ 510
0
votes
0
replies
633
views
hopach and heatmap
Clustering
hopach
Clustering
hopach
15.9 years ago
Ivan Baxter
▴ 60
0
votes
0
replies
586
views
About Hopach package
hopach
hopach
16.7 years ago
kpollard
▴ 110
0
votes
0
replies
455
views
About Hopach package
Clustering
hopach
Clustering
hopach
16.8 years ago
z3076426@student.unsw.edu.au
▴ 10
0
votes
0
replies
649
views
How to use distance functions from hopach package in a heatmap?
hopach
hopach
16.9 years ago
kpollard
▴ 110
0
votes
1
reply
697
views
R terminated when i try HOPACH in a loop,why?
hopach
hopach
updated 17.0 years ago by
Seth Falcon
★ 7.4k • written 17.0 years ago by
Xiao Shi
▴ 90
0
votes
0
replies
617
views
(no subject)
hopach
hopach
17.2 years ago
kpollard
▴ 110
0
votes
0
replies
557
views
[BioC}: export Hopoah to treeview
hopach
hopach
17.2 years ago
Anthony Bosco
▴ 500
22 results • Page
1 of 1
Recent ...
Replies
Answer: Question on RNA-Seq single sample data analysis in EdgeR
by
Gordon Smyth
45k
Yes, it is necessary to run `calcNormFactors`, as it always is for any DE analysis. It would also be sensible to filter non-expressed genes…
Comment: How to run GSVA with partially NA genes
by
blakebowen
• 0
I was a little worried about discarding so many genes, although sounds like this can't be helped. The results are still quite useful so I t…
Comment: ashr vs apeglm for interaction data
by
Ali Barry
▴ 30
Thanks, I'll trying playing a bit there. I have done some minor filtering already (requiring at least 5 counts in 10% of my samples, across…
Comment: ashr vs apeglm for interaction data
by
Michael Love
37k
I see why apeglm is conservative— the dispersion is very high within group. An idea would be to use ashr but do some additional filtering …
Comment: How to figure out the FC value from Limma
by
ATpoint
★ 1.2k
That’s an Excel problem, not a GEO/R problem or related to limma and Bioconductor.
Votes
Answer: How to run GSVA with partially NA genes
Answer: How to run GSVA with partially NA genes
Answer: How to properly use DESeq2 for an experiment
Comment: ashr vs apeglm for interaction data
Comment: How to figure out the FC value from Limma
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Popular Question
to
Gordon Smyth
45k
Popular Question
to
Robert Castelo
★ 2.9k
Popular Question
to
andrebolerbarros
▴ 10
Scholar
to
James W. MacDonald
59k
Scholar
to
Guido Hooiveld
★ 3.2k
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