Bioconductor Dnastring

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DNAString

updated 7.3 years ago by Hervé Pagès 16k • written 7.3 years ago by pgreenbank • 0

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biostrings subsetting View dnastring dnaseq

updated 9.1 years ago by James W. MacDonald 67k • written 9.1 years ago by arado1 • 0

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dnastring

updated 9.3 years ago by James W. MacDonald 67k • written 9.3 years ago by eulerphi8 • 0

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Biostrings DNAString Rcpp

updated 2.1 years ago by Hervé Pagès 16k • written 2.4 years ago by James • 0

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Comment: Question on performing ANOVA-like analysis using limma by Gordon Smyth 51k

What does `sampleid` represent? If you use duplicateCorrelation(), then the blocking factor should be subject, it isn't clear from your que…

Answer: Question on performing ANOVA-like analysis using limma by Gordon Smyth 51k

In time course experiments such as this, it is essential to account for baseline variability between subjects, so the second analysis given…

Comment: AffylmGUI does not start wit R 4.4.1 by Gordon Smyth 51k

Glad to hear that you have figured it out. Your experience might help other people with limmaGUI or affylmGUI on MacOS as well.

Answer: rtracklayer accessing UCSC data table not working by James W. MacDonald 67k

The track argument is deprecated now, so you can omit it. ``` > tbl.rmsk <- getTable(ucscTableQuery(mySession, table = "rmsk", range = …

Answer: For feline genome by James W. MacDonald 67k

This support site is meant to help people with specific questions about using Bioconductor software. There is a [vignette for `ROntoTools`]…

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Comment: AffylmGUI does not start wit R 4.4.1

DESeq2 testing ratio of ratios (RIP-Seq, CLIP-Seq, ribosomal profiling)

Comment: Error in GOmeth function of missMethyl when EPICv2 annotation is used

Answer: unable to access Annotationhub latest record

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